Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0454
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 222 EAIDECRSRTLSERRVSHQ*AKVM-VQGLAMLAAGFLSTSTSLPLCSVI 79
           +++++ RS+      +++    VM + G  ML  GFL  S SL LC  I
Sbjct: 475 DSLEQIRSQLYETESIAYTSCDVMMIIGAIMLLLGFLFLSFSLGLCDPI 523


>AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 222 EAIDECRSRTLSERRVSHQ*AKVM-VQGLAMLAAGFLSTSTSLPLCSVI 79
           +++++ RS+      +++    VM + G  ML  GFL  S SL LC  I
Sbjct: 475 DSLEQIRSQLYETESIAYTSCDVMMIIGAIMLLLGFLFLSFSLGLCDPI 523


>Z81476-2|CAB03918.1| 1469|Caenorhabditis elegans Hypothetical
           protein C25F9.2 protein.
          Length = 1469

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 593 RETTEKMLAHRCAGSY*IKTKDHLQKNH 676
           R  +   L H C GSY    K+ L+KNH
Sbjct: 544 RRASNGQLKHVCGGSYCKICKEKLEKNH 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,984
Number of Sequences: 27780
Number of extensions: 271106
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)