Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0454
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein ...    29   2.2  
At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim...    29   3.9  
At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative sim...    29   3.9  
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ...    28   5.1  
At5g54550.1 68418.m06791 expressed protein contains Pfam profile...    28   5.1  
At5g65440.1 68418.m08230 expressed protein                             27   8.9  
At1g48290.1 68414.m05394 expressed protein ; expression supporte...    27   8.9  

>At2g14255.1 68415.m01593 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain;
           low similarity to SP:Q96GR4 Zinc finger DHHC domain
           containing protein 12 (Zinc finger protein 400) {Homo
           sapiens}
          Length = 288

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -1

Query: 599 FLDQIFCSRLGVIEQAPML-SMCLCLNVI 516
           F+D+IFC +LG    APML S+ + L V+
Sbjct: 8   FVDKIFCGKLGETSYAPMLFSLIVILMVL 36


>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 442

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 262 ISDIVKFRANSYLRGDRRMQITYTIRASSVASVGEGDG 149
           I D+  + A SYLRG   +QI  T+ A   +SVG   G
Sbjct: 186 IGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTG 223


>At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 338

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 262 ISDIVKFRANSYLRGDRRMQITYTIRASSVASVGEGDG 149
           I D+  + A SYLRG   +QI  T+ A   +SVG   G
Sbjct: 82  IGDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTG 119


>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
            alpha-glucosidase GI:2648032 from [Solanum tuberosum]
          Length = 921

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
 Frame = +2

Query: 17   GHQAAPRSARLQQDGRQTALQM--------TLHKGNDVLVLRKPAASMARPWTI 154
            GH + P+SA ++   ++  ++M            G  VL +RKP   + + WT+
Sbjct: 865  GHSSGPKSALVEPLNQKAEIEMGPLRMGGLVASSGTKVLTIRKPGVRVDQDWTV 918


>At5g54550.1 68418.m06791 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 359

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 135 MLAAGFLSTSTSLPLCSVICSAVC 64
           +L+ GF S+S   P CS+IC+  C
Sbjct: 25  ILSNGFSSSSLQTPPCSIICANPC 48


>At5g65440.1 68418.m08230 expressed protein
          Length = 1050

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 129 LAWPDPGPSPSPTDATL 179
           L WP PGPSP+  D  +
Sbjct: 682 LVWPPPGPSPAVVDLVI 698


>At1g48290.1 68414.m05394 expressed protein ; expression supported
           by MPSS
          Length = 444

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 337 ASYSLCHKHVTNDWKRNS 390
           A +  C KH+ ++WKRNS
Sbjct: 176 AEHRQCAKHIMDNWKRNS 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,407,538
Number of Sequences: 28952
Number of extensions: 243038
Number of successful extensions: 642
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)