Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0453
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        29   0.51 
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   2.1  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    27   3.6  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   8.3  

>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 585 NRKRYCYLSSL*DVMLPMLGMSCSNSVLFFKQNKINFSV 469
           N+  YC L ++ D ++  + + C   +L+F   K+N  +
Sbjct: 67  NKNTYCELPAVADAIINSIALVCIIVILYFSSRKLNVEI 105


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 458 RSKLTEKLILFCLKNNTLLLQLIPSIGNITSYRLDK 565
           RSK+      FCL N  + L LI +IGN     L K
Sbjct: 339 RSKVGPGSCFFCLSNPNVALHLIVAIGNEAYMALPK 374


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 722 LKSSLKVISFTTRLFKNKKRSVGKQRKELSGGSNLKKKLRYSNTNRIEN 576
           LKS    +S   ++  +K+R  GK+RK +S   +       SN N IE+
Sbjct: 552 LKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSAS-----SNFNEIES 595


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 632 GGSNLKKK-LRYSNTNRIENDIVICLVC 552
           G  +LK++ L+YSN  +  ND  +C+ C
Sbjct: 149 GSESLKERSLKYSNRLQASNDTGVCVKC 176


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 613 KSCVIPTLIESKTILLFV*SV 551
           +SC + TL++ KTI+LF  +V
Sbjct: 747 ESCFLSTLLQHKTIILFTHNV 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,767
Number of Sequences: 5004
Number of extensions: 47871
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)