Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0452
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07) 128 4e-30
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 42 6e-04
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14) 31 1.1
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055) 29 3.3
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9) 29 4.3
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017) 28 5.7
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45) 28 7.5
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 28 7.5
>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
Length = 203
Score = 128 bits (309), Expect = 4e-30
Identities = 72/160 (45%), Positives = 99/160 (61%)
Frame = +3
Query: 3 YTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVL 182
YTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+
Sbjct: 7 YTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFETK----- 60
Query: 183 LTESNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNV 362
AN R L T + +++D ELLPA+ WVFP G+MQ++KQ+
Sbjct: 61 ----------TANACTRAMPLLTT-----YVNFADQELLPAAATWVFPTYGMMQYHKQST 105
Query: 363 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 482
++A D+ + +L+ LL +TFLV ER+TLAD+ V L
Sbjct: 106 DKAMEDVKKYMTMLNDVLLMKTFLVGERVTLADIAVCCVL 145
>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
Length = 260
Score = 41.5 bits (93), Expect = 6e-04
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Frame = +3
Query: 135 PAGKVPAFESADGKVLLTESNAIAYYVA--NESLRGGDLATQARVWQWASWSDSELLPAS 308
P +P E+ +G SN I Y+A ++ L G DL + +V QW + + A
Sbjct: 45 PFNTLPLLETKEGTFF--SSNTIIRYLAASSDKLYGSDLFQRGQVDQWLDITTCDFEAAV 102
Query: 309 CAWVFPYLGIMQFNKQNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 482
A G ++VE AK +D+ L ++ HL R FLV + +T+AD V +T
Sbjct: 103 AAVAIAKEG------RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSV-ATS 155
Query: 483 LHAFQHVLDPSVRSSLINVQRWF 551
+ L R N+ W+
Sbjct: 156 IAVILTSLGDEDRKPYQNIVSWY 178
>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
Length = 505
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/71 (25%), Positives = 30/71 (42%)
Frame = +3
Query: 18 NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 197
N +K + Q + K+ P V GE N + +KK +P GK + + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164
Query: 198 AIAYYVANESL 230
I + N+SL
Sbjct: 165 IIVNDIENDSL 175
>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 318 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 461
++P + Q NV+R +DL + K+ L R F V E T AD
Sbjct: 73 IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120
>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 240 DLATQARVWQWASWSDSELLPASCA 314
DL T A+V+ WA W ++ SCA
Sbjct: 78 DLTTTAQVYSWAMWEPWQMRNLSCA 102
>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
Length = 141
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 240 DLATQARVWQWASWSDSELLPASCA 314
DL T A+V+ WA W ++ SCA
Sbjct: 78 DLTTTAQVYSWAMWEPWQMRNLSCA 102
>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
Length = 364
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 147 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 28
+FR + + + S ++ N V +SHQSR IV T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141
>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
Length = 1675
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 422 THLPCYRENHTCRCHCLQYTAACFPARARPERPFVAD---KRSALVP 553
T P +R +HT L+ +PA+ RP+ P A K+ A VP
Sbjct: 1581 TQCPIFRPSHTIHHPPLRSRNVRYPAQVRPQYPLQASLNVKKGARVP 1627
>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
Length = 554
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 336 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 470
+M + K +VE K DL L+ + LLTR FL+ + + D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +2
Query: 413 SSHTHLPC--YRENHTCRCHCLQYT 481
S +T PC Y+ TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,012,814
Number of Sequences: 59808
Number of extensions: 491521
Number of successful extensions: 1459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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