Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0450
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   4e-09
SB_7550| Best HMM Match : INSIG (HMM E-Value=3.7)                      28   7.0  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 32/76 (42%), Positives = 45/76 (59%)
 Frame = +2

Query: 38  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 217
           +Q+ F QA   V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 218 KLAGTSKEDAQKAYIE 265
           +     +E A K Y++
Sbjct: 71  QHGKMPQEKAMKIYVQ 86


>SB_7550| Best HMM Match : INSIG (HMM E-Value=3.7)
          Length = 377

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 309 FYSLRAMEAMRPSTISM*AFWASSFEVPASLCQASNLALPF---KSRRPGLLAGSASP 145
           F  LRA  + RP  +++   W    + P+ +C   NLA      K++ P L A S  P
Sbjct: 300 FDVLRAGTSHRPVCLALLHSWVHRVDPPSPVCLHGNLACEVYRRKNKVPSLFALSTDP 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,054,101
Number of Sequences: 59808
Number of extensions: 313115
Number of successful extensions: 601
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)