Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0449
         (720 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F1DA2F Cluster: PREDICTED: hypothetical protein;...    35   2.3  
UniRef50_Q47404 Cluster: Glycosyl transferase; n=4; Escherichia ...    35   2.3  
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    35   2.3  
UniRef50_O96170 Cluster: Putative uncharacterized protein PFB037...    33   5.4  

>UniRef50_UPI0000F1DA2F Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 132

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +1

Query: 439 SMMISYEIDTSCTVINHNVSSNNFRLYQYSKSLHLNISLCT 561
           S+ + YE D SCT+I +NVS N+  LY    +  L  +LC+
Sbjct: 86  SVTVDYEEDGSCTLILNNVSLNHSGLYSCKATNALGEALCS 126


>UniRef50_Q47404 Cluster: Glycosyl transferase; n=4; Escherichia
           coli|Rep: Glycosyl transferase - Escherichia coli
          Length = 409

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 24/82 (29%), Positives = 42/82 (51%)
 Frame = -2

Query: 392 HLTEI*GQHSLYLPTCCVFYR*C*IIKGVNVMKVEIKLMSRKPSSKIRKTSKLHRFIYKE 213
           HL  +     +Y P   + Y+ C   K  ++  + IKL + + S K   T +LH  I K 
Sbjct: 331 HLIGLASSSLVYAP---LVYKEC---KTYSIAPIIIKLCNNEKSQKGINTLRLHFDILKN 384

Query: 212 YD*VPILHKDVVTLAINNKKDF 147
           +D V IL  D+ + ++++K+ F
Sbjct: 385 FDNVKILSDDITSPSLHDKRIF 406


>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 484 NHNVSSNNFRLYQYSKSLHLNISLC--TLF*NYLKFNITN 597
           N+ + +NN  LYQY+K++ +N +L    LF NY+  NI N
Sbjct: 659 NYYIYNNNMNLYQYNKNILINNNLLYNKLFYNYINNNIYN 698


>UniRef50_O96170 Cluster: Putative uncharacterized protein PFB0375w;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFB0375w - Plasmodium falciparum
            (isolate 3D7)
          Length = 1802

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 448  ISYEIDTSCTVINHNVSSNNFRLYQYSKSLHLNISL-----CTLF*NYLKFNITNKI 603
            I+Y+ DTS  +   N+ +N+ + Y    + + N+       C  + NY K+NI N I
Sbjct: 1253 ITYKQDTSLDIDKENILNNSIKKYNIGSTYYYNMKCDKYGKCNKYDNYDKYNILNDI 1309


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,600,511
Number of Sequences: 1657284
Number of extensions: 10974868
Number of successful extensions: 21349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21343
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)