Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0449
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887     29   4.9  
11_06_0588 + 25272067-25274850                                         28   6.5  

>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
          Length = 1205

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 340 TQHVGRYRLCCPQISVKWKKRKCYDFQIV 426
           T+HV   RLC PQ SV  + +K  D QI+
Sbjct: 318 TEHVEVARLCVPQDSVPPEHKKLLDDQII 346


>11_06_0588 + 25272067-25274850
          Length = 927

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 349 VGRYRLCCPQISVKWKKRKCYDFQIVLIIISMMISYEIDTS--CTVINHNVSSNNFRLYQ 522
           VGR  LC   I    K + C    +V  +I+ ++S   DT+   TV+     + +  + +
Sbjct: 490 VGRLLLCPSDIDASGKVKTCTVLDLVHDVITDLVSGGYDTTFVVTVLAPRELARHLSI-R 548

Query: 523 YSKSLHLNIS 552
           +S  LH+++S
Sbjct: 549 FSTKLHISLS 558


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,081
Number of Sequences: 37544
Number of extensions: 259706
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)