Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0449
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82280-8|CAB05269.3|  280|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z73975-1|CAA98276.1|  282|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z68333-4|CAA92723.2|  271|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical...    28   5.8  

>Z82280-8|CAB05269.3|  280|Caenorhabditis elegans Hypothetical
           protein R05A10.8 protein.
          Length = 280

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = -2

Query: 182 VVTLAINNKKDFDIEIESVTNGSYLLTGSSQPSMSQ 75
           +V+L + N+ +FD+ I++VT+G  L+ G+ +   +Q
Sbjct: 122 IVSLGLKNQINFDLHIQNVTDGRCLILGADKDPQNQ 157


>Z73975-1|CAA98276.1|  282|Caenorhabditis elegans Hypothetical
           protein T06E8.1 protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +2

Query: 53  ETLFQIKVVTSMAAMTQLISKNHLLRFLFRYQNPFYCLLLT*QRLCVG*VPSHTLCK*ID 232
           E  + I V   ++ +  L + + +  +  R    ++ +LL    +CV  +PS    K  D
Sbjct: 2   ENFWSIVVFFLLSILFILYNISTVCHYYMRISFYYFTILLHGMEVCVTMIPSWLNGKGAD 61

Query: 233 VIYWSFLFW 259
            ++ SF +W
Sbjct: 62  YVFHSFFYW 70


>Z68333-4|CAA92723.2|  271|Caenorhabditis elegans Hypothetical
           protein C05C12.4 protein.
          Length = 271

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -2

Query: 284 KLMSRKPSSKIRKTSKLHRFIYKEYD*VPILHKDVVTLAI---NNKKDFDIEIESV 126
           K   +  + K+RK  + + FI + YD  P+  +++  L +   + K+ FD+E  S+
Sbjct: 183 KQQKQHANCKLRKNGESNGFINQNYDFYPLKSRNLTNLELSEKSTKEHFDVETLSM 238


>AL110479-20|CAB54371.1|  338|Caenorhabditis elegans Hypothetical
           protein Y105C5B.23 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -2

Query: 182 VVTLAINNKKDFDIEIESVTNGSYLLTGSSQ 90
           +++L +NN+ D+D  I++VT G  ++ G+ +
Sbjct: 171 LLSLGLNNQIDYDQHIQNVTGGHCVILGADK 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,324
Number of Sequences: 27780
Number of extensions: 276142
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)