Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0447
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    28   1.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   2.1  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    27   3.6  

>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 202 NIVTIYYRLYKNRYSVYFERDSVIYVSCAGQLPTVSAGDVK 80
           +I+T++ R  ++R S     D++  V    Q+P V+ GDVK
Sbjct: 172 DIITVHGRTRQDRSSFPVNLDAIREVRPCVQIPVVANGDVK 212


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -3

Query: 339 FLKKYKI----CVFYIRYII*FTHPSSKIRTALSHCS 241
           FLKKY++    C+  I YI+ +TH  SK   ++S  S
Sbjct: 7   FLKKYRLILLWCILGIAYILFWTHRISKAFASVSSTS 43


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = -1

Query: 221 TIWKILKYRYNLLSIVQKSIFSLF*ARFCDLCVVCRSAPYSQRRRR*VTCSRTGRRDVWC 42
           T++ I+ +       V  S+F+ F  R   +  V R  P  Q     +  SRT ++ +W 
Sbjct: 308 TLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQNNIIFLEYSRTSKQGMWS 367

Query: 41  CLA 33
            L+
Sbjct: 368 ILS 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,728
Number of Sequences: 5004
Number of extensions: 53611
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)