Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0447
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233...    31   1.2  
01_06_0194 - 27368563-27370956                                         29   2.9  
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473...    29   3.8  
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602...    29   3.8  

>02_01_0331 +
           2331774-2331985,2332825-2332952,2333392-2333452,
           2333878-2334035,2335001-2335083,2336364-2336468,
           2336659-2336756,2337136-2337256,2337366-2337416,
           2337987-2338179,2338277-2338845,2338964-2339017,
           2339250-2339412,2340155-2340417,2340530-2340717,
           2341875-2341945,2342021-2342309,2343962-2344027,
           2344186-2344303,2344468-2344575,2344656-2344805,
           2344892-2345065,2345161-2345232
          Length = 1164

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = +1

Query: 121 TTHKSQNRAQNKLNIDFCTIDSKL*RYFSIFQIVIQY-*LIGTVTKSSSYLRARVCKLNN 297
           T HKSQ +   ++ + F  + SK   + ++F ++  +   + T      Y   RVC +N 
Sbjct: 500 TAHKSQRKFSVEMLLSFRKLQSKSTSWSAVFDVIENFMKYLNTNVTIQEYELKRVCNVNT 559

Query: 298 VAYIKYTNFV 327
              ++ T+ V
Sbjct: 560 ALLVQATSQV 569


>01_06_0194 - 27368563-27370956
          Length = 797

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 36  KATPNVASTSSRTCNLTSPALTVGS 110
           K+TP+++     TCNL++P + +GS
Sbjct: 412 KSTPSISKQQRLTCNLSAPEIMLGS 436


>07_01_0633 -
           4735298-4735485,4736083-4736114,4736203-4736297,
           4736414-4736487,4736682-4736817,4736902-4736965,
           4737101-4737166,4737265-4737446,4737824-4737948,
           4738031-4738169,4738250-4738369,4738675-4738746,
           4738900-4738935,4739633-4739749,4739821-4739953,
           4740053-4740156,4740243-4740370,4740880-4741010,
           4741561-4741757,4743906-4744583
          Length = 938

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 308 IYATLFNLHTRARRYELLLVTVP-IN*Y*MTIWKILKYRYNLLS 180
           I A L N+HTRA + +LL+V +P +N Y   I ++ +    ++S
Sbjct: 590 IEAALSNIHTRAPQLQLLIVILPDVNGYYGRIKRVCETELGIVS 633


>02_05_0435 -
           28958422-28958665,28959328-28959462,28960056-28960211,
           28960287-28961092,28961177-28961254,28961809-28961883,
           28962127-28962215,28962735-28962843,28963007-28963086,
           28963739-28963794,28963876-28963958,28964049-28964118,
           28964200-28964309,28964395-28964548,28965183-28965382,
           28966175-28966348,28969080-28969277,28970564-28970791
          Length = 1014

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 544 AHIPQYYMLHTNT*AYKQYGHRTLHVDMLGANGAATGRVYF 422
           AHI  + + ++N+ +  Q G R  H   L  + A+TG V +
Sbjct: 871 AHIQSHAIANSNSLSMNQRGDRLFHASTLTESSASTGHVTY 911


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,071
Number of Sequences: 37544
Number of extensions: 317615
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)