Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0447
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38592| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)                   30   1.7  
SB_45073| Best HMM Match : ERM (HMM E-Value=0)                         30   1.7  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   2.2  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   2.2  

>SB_38592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 324 CTFLKKTTVHSSNSLNWQHCKVSQRIQNKLSYQK*TLPVAAPLAPSMSTCRVRW 485
           C+ +  T VH +NSL   H   S   Q  L  Q   LP ++P   + S C  RW
Sbjct: 66  CSNVTNTGVHDNNSLTVIHTASSSFSQLFLGLQ---LPPSSPTTSTRSACYHRW 116


>SB_51269| Best HMM Match : PAE (HMM E-Value=8.9e-05)
          Length = 533

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 124 SCAGQLPTVSAGDVKLHVLELVDAT 50
           +C G LP++SA D+KLH L  V+ T
Sbjct: 173 ACEGDLPSLSAFDLKLHYLTDVNTT 197


>SB_45073| Best HMM Match : ERM (HMM E-Value=0)
          Length = 504

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +2

Query: 35  QGNTKRRVDQFENM 76
           QGNTK RVDQFEN+
Sbjct: 491 QGNTKSRVDQFENL 504


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 119  CRSAPYSQRRRR*VTCSRTGRRD--VWCCL 36
            C S P+  R RR  +C++ GRRD   WC L
Sbjct: 2511 CCSFPFIYRGRRYNSCTKAGRRDRRPWCSL 2540


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 119 CRSAPYSQRRRR*VTCSRTGRRD--VWCCL 36
           C S P+  R RR  +C++ GRRD   WC L
Sbjct: 608 CCSFPFIYRGRRYNSCTKAGRRDRRPWCSL 637



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 119  CRSAPYSQRRRR*VTCSRTGRRD--VWCCL 36
            C S P+  R RR  +C++ GRRD   WC L
Sbjct: 2771 CCSFPFIYRGRRYNSCTKAGRRDRRPWCSL 2800



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 119  CRSAPYSQRRRR*VTCSRTGRRD--VWCCL 36
            C S P+  R RR  +C++ GRRD   WC L
Sbjct: 3513 CCSFPFIYRGRRYNSCTKAGRRDRRPWCSL 3542


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,873,688
Number of Sequences: 59808
Number of extensions: 406869
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)