Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0447
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80439-6|AAB37642.1|  564|Caenorhabditis elegans Ezrin/radixin/m...    30   1.5  
U80439-5|AAB37643.1|  563|Caenorhabditis elegans Ezrin/radixin/m...    30   1.5  
AY643539-1|AAT66915.1|  566|Caenorhabditis elegans ERM-1C protein.     30   1.5  
AY643538-1|AAT66914.1|  563|Caenorhabditis elegans ERM-1A protein.     30   1.5  
AB107270-3|BAC98358.1|  564|Caenorhabditis elegans ERM-1B protein.     30   1.5  
AB107270-2|BAC98357.1|  566|Caenorhabditis elegans ERM-1Asv prot...    30   1.5  
AB107270-1|BAC98356.1|  563|Caenorhabditis elegans ERM-1A protein.     30   1.5  
AB107269-1|BAC98355.1|  564|Caenorhabditis elegans ERM-1B protein.     30   1.5  
AB107268-1|BAC98354.1|  563|Caenorhabditis elegans ERM-1A protein.     30   1.5  

>U80439-6|AAB37642.1|  564|Caenorhabditis elegans
           Ezrin/radixin/moesin protein 1,isoform b protein.
          Length = 564

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 552 GNTKRRIDQYENM 564


>U80439-5|AAB37643.1|  563|Caenorhabditis elegans
           Ezrin/radixin/moesin protein 1,isoform a protein.
          Length = 563

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 551 GNTKRRIDQYENM 563


>AY643539-1|AAT66915.1|  566|Caenorhabditis elegans ERM-1C protein.
          Length = 566

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 554 GNTKRRIDQYENM 566


>AY643538-1|AAT66914.1|  563|Caenorhabditis elegans ERM-1A protein.
          Length = 563

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 551 GNTKRRIDQYENM 563


>AB107270-3|BAC98358.1|  564|Caenorhabditis elegans ERM-1B protein.
          Length = 564

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 552 GNTKRRIDQYENM 564


>AB107270-2|BAC98357.1|  566|Caenorhabditis elegans ERM-1Asv
           protein.
          Length = 566

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 554 GNTKRRIDQYENM 566


>AB107270-1|BAC98356.1|  563|Caenorhabditis elegans ERM-1A protein.
          Length = 563

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 551 GNTKRRIDQYENM 563


>AB107269-1|BAC98355.1|  564|Caenorhabditis elegans ERM-1B protein.
          Length = 564

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 552 GNTKRRIDQYENM 564


>AB107268-1|BAC98354.1|  563|Caenorhabditis elegans ERM-1A protein.
          Length = 563

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 38  GNTKRRVDQFENM 76
           GNTKRR+DQ+ENM
Sbjct: 551 GNTKRRIDQYENM 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,542,332
Number of Sequences: 27780
Number of extensions: 306953
Number of successful extensions: 579
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)