Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0446
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 28 1.1
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 28 1.1
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 28 1.5
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 27 1.9
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 27 3.4
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 27 3.4
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 27 3.4
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 26 4.5
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb... 26 4.5
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 26 5.9
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 5.9
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 26 5.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 7.8
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 7.8
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 25 7.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 7.8
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/91 (21%), Positives = 35/91 (38%)
Frame = +1
Query: 31 NRRTVQPIQAEPTQNYFTPAQFLSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIE 210
N R +QP +N F +LP + + ++ + I K + K + +
Sbjct: 228 NNRPLQPFTIVSDRNETRKNVFGFGYNLPTMTVDEYLDEEMKRGNIISQKDNPPKSDSDD 287
Query: 211 TDQVDETSKYSASDSQWKYEKEAAKRTTRNT 303
D ++ + D W KEA R + NT
Sbjct: 288 EDDYEKLDAKTMKDRYWDEFKEANPRGSGNT 318
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Frame = +1
Query: 61 EPTQNYFTPAQFLSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDETSKY 240
E + T FL+ +SL G+ +++ Y+ + + K+ N + + T+ Y
Sbjct: 74 ESCNPHITLCTFLALESLKGIQSKWYG--YI--EYLPKTFNTPLYFNENDNAFLISTNAY 129
Query: 241 SASDSQ---WKYEKEAAKRTTRNTQEVETFPIYQW 336
SA+ + WK+E + A + E TF +Y W
Sbjct: 130 SAAQERLHIWKHEYQEALSLHPSPTERFTFDLYIW 164
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Frame = +1
Query: 142 PLYLNEQKIEKSKQDDSKLNR------IETDQVD-ETSKYSASDSQWKYEKEAAKRTTRN 300
P+ + + + K K+D SKLN IE D E S+ S S S+ + +K+ K + +
Sbjct: 644 PIVIRDLGLNKQKRDSSKLNHKEPSNPIEERNEDIEPSEASTSVSKKRKQKKKKKNSGKL 703
Query: 301 TQEVE 315
T E E
Sbjct: 704 TIEAE 708
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +1
Query: 121 VGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRN 300
+GL+ L++NE ++ L+ +T D + +S + + +T
Sbjct: 1916 LGLQKPNKLHVNELSSHSGTEESESLSNGQTSYDDIIAM--TDESNYTQLGDDDFKTIHG 1973
Query: 301 TQEVETFPIYQWPIYII 351
++ F IY WPIY I
Sbjct: 1974 LKKFMLFKIYDWPIYSI 1990
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 151 LNEQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
L ++ I +S S+L+ QVD + A+ + +YE E +RT N + E
Sbjct: 166 LLQKMIVESHHRTSQLHTDNYKQVDNVRQTLANFAYKEYESEERRRTVLNIRRAE 220
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 157 EQKIEKSKQDDSKLNRIETDQVDETS-KYSASDSQWKYEKEAAKRTTRNTQEV 312
++K+E+ + ++ R+ T QV+ S +YS SQW E E K+ ++ +E+
Sbjct: 126 QRKMEELTVESMEVVRL-TRQVETLSTQYSIQRSQWVREDEKKKKEIQDLKEL 177
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 148 YLNEQKIEKSKQDDSKLN-RIETDQVDETSKYSAS----DSQWKYEKEAAKRTTRNTQEV 312
Y NE++ E++ QD N I+ + + +K S + WK +++ +RT R +V
Sbjct: 47 YRNEKECEQAIQDFCHQNVNIKREDITLITKIPDSLQGFERTWKAVEQSLRRTGRPKLDV 106
Query: 313 ETFPIYQWPI 342
+WP+
Sbjct: 107 VLIHSPKWPV 116
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 223 DETSKYSASDSQWKYEKEAAKRTTRNTQEVETFPIYQWP 339
D+T+ Y S ++ K++ + T+NT E ET PI P
Sbjct: 195 DDTTWYFTSSPSFQPLKDSDRSQTKNTHE-ETSPIVSSP 232
>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 12 SQLLHTKPTNSSANTGRTHPKLFHTSPI 95
SQLL+ P +SS +GR L HT I
Sbjct: 17 SQLLNPPPPSSSTRSGRLFAPLSHTMRI 44
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 20 PTYQTDEQFSQYRQNPPKTI 79
P Y+ +E F ++QNPP +
Sbjct: 157 PFYEHEEDFINFKQNPPSGV 176
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 263 NMRKKPQKELQETRKRLKHSPSTNGQY 343
N+RKK + LQE +K H+ +T+ Y
Sbjct: 170 NLRKKSRLNLQEIQKNSLHTGNTSHPY 196
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 49 PIQAEPTQNYFTPAQFLS-SQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVD 225
P+ A N + Q S SQ +P ++ PL+LN +DS L+ D
Sbjct: 230 PVSATNEANKLSDIQTSSPSQDIPA---KHLEPLHLNRSLSSSPSSEDSDLSLSSDSDDD 286
Query: 226 ETSKYSASD 252
E + S S+
Sbjct: 287 EKKQPSKSE 295
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +1
Query: 196 LNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVETFPIYQWPIYI 348
L+R + D+V+E S + DS+ K + K ++ + T ++W ++
Sbjct: 273 LDRKKVDEVEEHSSIAKLDSEEKIRETKKKNSSTSLSPDPTSDNFEWGSWV 323
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 224 MRLVNTLPVILSGNMRKKPQKELQETRKRLKHSPST 331
M ++ P S + KKPQ + +R+KHSP +
Sbjct: 133 MDTLHVCPTCGSCSDSKKPQSNKKHRGRRVKHSPKS 168
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +1
Query: 97 LSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDETSKY 240
L S +LP + ++LNE I S D+ + +ETD+ S++
Sbjct: 375 LRSLALPEIVAIDSPDIFLNEDHINSSGPSDTSSHMLETDESSIHSRH 422
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = +1
Query: 115 PGVGLRYFVPLY-LNEQK---IEKSKQDDSKLNRIETDQVDETSKYSASDSQ---WKYEK 273
PG + + VP + + K +E K+D+S L R+E Q+ YS +Q ++Y
Sbjct: 423 PGTAMSFVVPKSEVGKHKPTSLESCKKDESVLRRLEKKQI-SLQPYSFDKNQIDAFRYRM 481
Query: 274 EAAKR 288
E A R
Sbjct: 482 EDALR 486
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +1
Query: 115 PGVGLRYFVPLYLNEQKIEKS---KQDDSKLNRIETDQVDETSKYSASDSQWKYEKE 276
P + + F + NE +I+ S +Q+ + L R +DQV S++++ S + EKE
Sbjct: 13 PNLQQQKFEAINANEDQIDYSSNLEQNYNSLIRQGSDQVIPLSRFASEKSALELEKE 69
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +1
Query: 157 EQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQE 309
E K+E+++ ++ + ETD ++ K +DS+ +K + +++T E
Sbjct: 481 EDKVEETESKEADVKAKETDSIEVDDKEEKTDSKETADK-VEQTDSKDTNE 530
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,000
Number of Sequences: 5004
Number of extensions: 54165
Number of successful extensions: 202
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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