Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0446
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659... 31 0.86
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351... 30 1.5
01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549... 29 2.6
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920... 29 3.5
02_05_1033 + 33642479-33642688,33643089-33643343,33643479-336436... 29 3.5
05_02_0160 - 7194699-7195019,7195207-7195368,7195806-7195953,719... 29 4.6
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 28 6.1
02_05_1046 - 33740809-33741201,33741359-33741511,33741583-337424... 28 6.1
11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198 28 8.0
11_03_0042 - 9167881-9168075,9168159-9168251,9168328-9168409,916... 28 8.0
08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827... 28 8.0
>06_02_0038 +
10865068-10865150,10865249-10865335,10865835-10865936,
10867000-10870078
Length = 1116
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 668 FNFIRLHIVFFLYIKHCQTQFLCNYVYDYFKFW 570
F +I LH+VFF +H Q+LC Y K W
Sbjct: 323 FAYITLHVVFF---RHLAPQWLCEIFYTIRKHW 352
>12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,
3515033-3517110,3517649-3517976,3519136-3519255,
3519299-3519352,3520115-3520154,3520344-3520411
Length = 1088
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 157 EQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQ---WKYEKEAAK 285
E +IE + QD+ KLN + VD T+K A S+ K + EAAK
Sbjct: 880 ESEIESAHQDNRKLNDKVSSAVDFTAKEEAMQSERRAMKQQLEAAK 925
>01_01_0710 +
5492389-5492745,5493664-5493948,5494121-5494438,
5494900-5495127,5495884-5495984,5496493-5496604,
5496654-5496662,5496897-5497340,5497649-5497909
Length = 704
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 27 TKPTNSSANTGRTHPKLFHTSPILKFSKPTR 119
T P SS ++ R + + FH+ P++ +KP++
Sbjct: 504 THPAESSQDSQRVYTRTFHSGPLVNQNKPSK 534
>11_03_0044 -
9198016-9199143,9199579-9199674,9199771-9199846,
9200330-9200547,9200703-9200918,9201336-9201521,
9201607-9201708,9201828-9202495,9203248-9203314
Length = 918
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 275 KPQKELQETRKRLKHSPSTNGQYILFLDTVKILTT 379
K + EL+E K + NG+ ILFLD V L T
Sbjct: 355 KYRGELEERLKNILEEIKQNGEIILFLDEVHTLVT 389
>02_05_1033 +
33642479-33642688,33643089-33643343,33643479-33643603,
33643827-33643908,33644008-33644076,33644102-33644341,
33644431-33644496,33645087-33645155,33645229-33645366,
33645681-33645754,33646146-33646255,33646428-33646525,
33646595-33646633,33646771-33646890,33646984-33647109,
33647321-33647382,33647467-33647518,33648182-33648436
Length = 729
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Frame = +1
Query: 28 PNRR-TVQPIQAEPTQNYFTPAQFLSS---QSLPGVGLRYFVPLYLNEQKIEKSKQDDSK 195
P++R T + + +P + F+S + LPG+G RY +E + + K D +
Sbjct: 284 PSKRPTAKKLLKQPFFKQARSSDFISRKLLEGLPGLGARYLALKEKDEVLLSQKKMPDGQ 343
Query: 196 LNRIETDQVDETSKYSASDSQWKYEKEAAK 285
I D+ Y S W ++ + K
Sbjct: 344 KEEISQDE------YKRGISSWNFDMDDLK 367
>05_02_0160 -
7194699-7195019,7195207-7195368,7195806-7195953,
7196286-7196362,7196717-7196787,7196891-7196977,
7197662-7198201,7198430-7198439
Length = 471
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 130 RYFVPLYLNEQKIEKSKQDDSKLNRIE-TDQVDETSKYSASDSQWKYEKEAAKRTTRNTQ 306
RYF ++ + +D K ++ T+ D +S+YSA S++ A+ + TQ
Sbjct: 389 RYFGSYSSSDYDSGQYNEDMKKFRKMAFTNNNDTSSQYSAPTSEYGQIPSASSSEGQQTQ 448
Query: 307 EVET 318
EVE+
Sbjct: 449 EVES 452
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 151 LNEQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
L EQ++ + +QDD L ++ DQ E ++ + + E+ AA+ Q+ E
Sbjct: 385 LTEQRLLREQQDDEYLASLQADQEKELKALQEAELR-RLEETAAREAALEKQKQE 438
>02_05_1046 -
33740809-33741201,33741359-33741511,33741583-33742461,
33742622-33742630
Length = 477
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 424 FLHNMISCDVCKLIK 380
FL+NM+SCD CK I+
Sbjct: 418 FLYNMLSCDTCKDIR 432
>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
Length = 546
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = +3
Query: 12 SQLLHTKP-TNSSANTGRT--HPKLFHTS 89
S LLH KP + SS+NT T HP L H S
Sbjct: 16 SLLLHGKPISRSSSNTNTTLPHPSLLHKS 44
>11_03_0042 -
9167881-9168075,9168159-9168251,9168328-9168409,
9168495-9168605,9171653-9171898,9172448-9173073,
9173402-9173422
Length = 457
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 297 SCSSFCGFFLIFPLRITGRVFTSLIDL 217
S S+ CG+++ LR++GR T DL
Sbjct: 368 SLSNLCGYYMCEMLRVSGRYRTEFTDL 394
>08_02_0619 -
19382172-19382366,19382453-19382545,19382621-19382702,
19382793-19382903,19383323-19383681,19384330-19384533,
19384582-19384756,19384885-19385474,19385555-19385800
Length = 684
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 297 SCSSFCGFFLIFPLRITGRVFTSLIDLI 214
S ++ CG++L LR+ GR T DL+
Sbjct: 595 SLTNLCGYYLCEMLRVNGRYRTEFTDLL 622
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,658,261
Number of Sequences: 37544
Number of extensions: 282064
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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