Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0446
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)                 32   0.50 
SB_39966| Best HMM Match : CRA_rpt (HMM E-Value=8.6)                   30   2.0  
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        29   3.6  
SB_22695| Best HMM Match : TSP_3 (HMM E-Value=5.9)                     29   3.6  
SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)               29   4.7  
SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  28   8.2  
SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4)                   28   8.2  

>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
          Length = 867

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +1

Query: 139 VPLYLNEQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRN 300
           +P+   E KI ++K +D K  R   DQV+E  K  A     +YEK +A    +N
Sbjct: 245 IPITEKEVKILENKYNDLKQLRTMKDQVEELKKERAWAEVIEYEKVSAHLKLKN 298


>SB_39966| Best HMM Match : CRA_rpt (HMM E-Value=8.6)
          Length = 159

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 157 EQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNT-QEVET 318
           E++ EK KQ++++    ET++  ET K +  + + K EKE  K     T +E ET
Sbjct: 44  EKEEEKWKQEETE-KEAETEKEAETEKEAEKEKKKKTEKEEEKGKQEETGKEAET 97


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +1

Query: 157 EQKIEKSKQDDSKLNRIETDQVD--ETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
           E K+EK +QD  ++ R +++ VD  E     A D   + +KE  +R  +  +++E
Sbjct: 82  EGKVEKQRQDIKRIKREKSEMVDKYEDELEEALDCYEESKKEMEQRFEKRIRDLE 136


>SB_22695| Best HMM Match : TSP_3 (HMM E-Value=5.9)
          Length = 259

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 218 KSMRLVNTLPVILSGNMRKKPQKELQETRKRLKHSPSTNGQ 340
           K ++L   L V  S  +RK P++E Q  R   KH  S + Q
Sbjct: 193 KGLKLPAILEVRYSDPVRKNPRRETQRLRTSFKHERSCDKQ 233


>SB_19560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 24  HTKPT--NSSANTGRTHPKLFHTSPILKFSKP 113
           HT+PT  ++    G T P L HT P+L  ++P
Sbjct: 66  HTRPTLGHTRPTLGHTRPTLGHTRPMLGHTRP 97



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 24  HTKPT--NSSANTGRTHPKLFHTSPILKFSKP 113
           HT+PT  ++    G T P L HT P+L  + P
Sbjct: 73  HTRPTLGHTRPTLGHTRPMLGHTRPMLGHTHP 104


>SB_23899| Best HMM Match : TNFR_c6 (HMM E-Value=7.1e-09)
          Length = 533

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
 Frame = +1

Query: 28  PNRRTVQPIQAEPTQNYFTPAQFLSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRI 207
           P    V P   EPT    T  +  SSQS P         L +   K        + L   
Sbjct: 222 PRTPNVPPTSPEPTTRRSTSTESTSSQSTPSPASSVTQLLDVTRSKTGHDTSSVTTLPVS 281

Query: 208 ETDQVDETSKYSASDSQ-WKY 267
           +T   D T++  + DS  +KY
Sbjct: 282 QTPTSDPTTQLQSGDSNTYKY 302


>SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +1

Query: 160 QKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQE 309
           Q++E     + K  + E  + +       SD +WK  K   +RT R   E
Sbjct: 68  QRMEGQSDREWKNRKTENGRTERQRMEGQSDREWKNRKTETRRTERQRME 117


>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 157 EQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVET 318
           E+++E  K+ +++   +ET +  ET K      +W+ E    +  +   +EVET
Sbjct: 42  EKEVETEKEVETE-KEVETKKEVETEKEVEGSRKWRREGSGDRERSGGEKEVET 94


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 40   TVQPIQAEPTQNYFTPAQFLSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQ 219
            TV+P  AE T++Y TPA    +  +      + VP+ L+++ +E S+    K+   E   
Sbjct: 1332 TVKPGTAEDTKDYTTPADLDLAFEMGETDKIFVVPI-LDDKLVEPSENFTVKMTSSEPTV 1390

Query: 220  V--DETSKYSASD 252
            V   +TS  +  D
Sbjct: 1391 VITSDTSTVTIED 1403


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 8   KIATPTYQTDEQFSQYRQNPPKTISHQPNS 97
           K A P  Q  +Q  + ++ PPK   HQP++
Sbjct: 191 KYAAPLPQRAQQLRRAKRKPPKPSEHQPSA 220


>SB_26345| Best HMM Match : DUF1531 (HMM E-Value=2.4)
          Length = 169

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 154 NEQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
           +E+K +K K+D  K  + E + V ET +     ++ K +KE  +  T   Q+ E
Sbjct: 54  SEKKKKKKKKDKKK--KTEEETVPETVQTETPSARKKKKKEKEQEETMEEQQTE 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,081,524
Number of Sequences: 59808
Number of extensions: 354007
Number of successful extensions: 1056
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)