Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0446
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 33 0.15
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 31 1.0
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 31 1.0
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 31 1.0
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 31 1.0
Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical pr... 30 1.4
U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical pr... 30 1.8
U23510-14|AAO38611.1| 199|Caenorhabditis elegans Hypothetical p... 28 5.5
U23510-13|AAK71392.2| 425|Caenorhabditis elegans Hypothetical p... 28 5.5
AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical ... 28 5.5
AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical ... 28 7.2
AF025469-1|AAG00030.3| 578|Caenorhabditis elegans Hypothetical ... 28 7.2
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 157 EQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
E+K++K K+ ++ +RIE + +E K + K KE KR + +E E
Sbjct: 973 EEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQEEKERKEREKREEKERKERE 1025
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 157 EQKIEKSKQDDSKLNR-IETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVETFPIYQ 333
E++ K K+ D K N+ ++ + D+ S S S+ WK ++++KR R EVE+ P Y+
Sbjct: 283 EKRKNKDKKKDKKKNKKSKSRETDDDSDGSDSEDDWK--EKSSKRIKR---EVESSPEYR 337
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 157 EQKIEKSKQDDSKLNR-IETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVETFPIYQ 333
E++ K K+ D K N+ ++ + D+ S S S+ WK ++++KR R EVE+ P Y+
Sbjct: 283 EKRKNKDKKKDKKKNKKSKSRETDDDSDGSDSEDDWK--EKSSKRIKR---EVESSPEYR 337
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 30.7 bits (66), Expect = 1.0
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Frame = +1
Query: 4 EENRNSYIPNRRTVQPIQAEPTQNYFTP-AQFLSSQSLPGV----GLRYFVPLYLNEQKI 168
++N ++ +P RT T+ TP A+ LS +++ + G + LN +
Sbjct: 1430 KKNPDADVP--RTPLNALRSTTEEKSTPNARLLSPKTIKKIRRSLGALIHTEMRLNPPNL 1487
Query: 169 EKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
E++K DD+ +NR + Q D+T + + + + E A K T V+
Sbjct: 1488 EETKIDDTTINR--SKQADKTEEKTIVEEEPMEEAAAEKTVTAENDHVD 1534
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 30.7 bits (66), Expect = 1.0
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Frame = +1
Query: 4 EENRNSYIPNRRTVQPIQAEPTQNYFTP-AQFLSSQSLPGV----GLRYFVPLYLNEQKI 168
++N ++ +P RT T+ TP A+ LS +++ + G + LN +
Sbjct: 1430 KKNPDADVP--RTPLNALRSTTEEKSTPNARLLSPKTIKKIRRSLGALIHTEMRLNPPNL 1487
Query: 169 EKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
E++K DD+ +NR + Q D+T + + + + E A K T V+
Sbjct: 1488 EETKIDDTTINR--SKQADKTEEKTIVEEEPMEEAAAEKTVTAENDHVD 1534
>Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical
protein T28D6.7 protein.
Length = 322
Score = 30.3 bits (65), Expect = 1.4
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = +1
Query: 85 PAQFLSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDETSKYS-----AS 249
PA FL + G+ L V + + SKQ SKL R+ +V E S Y
Sbjct: 17 PAYFLQKATYSGIKLTRHVAVQEKPRPRVASKQCTSKLMRVNVARVWEDSDYEKVKNLCE 76
Query: 250 DSQWKYEKEAAKRTTRNTQEVE 315
DS+ E K T TQ +E
Sbjct: 77 DSEGWVEVYKKKDITICTQNIE 98
>U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical
protein K09E2.2 protein.
Length = 596
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 179 NRMIRN*IVLKPIKSMRLVNTLPVIL-SGNMRKKPQKELQETRKRLKHSPS-TNGQYILF 352
N+++ + K + L NT+ + L SG RKK Q L + R L SPS G++I F
Sbjct: 221 NKLVTKKKLRKKVVKKGLTNTIELALKSGEKRKKKQAHLSQ-RTLLSRSPSLKRGEHIRF 279
>U23510-14|AAO38611.1| 199|Caenorhabditis elegans Hypothetical
protein R12C12.8b protein.
Length = 199
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 354 RNNIYWPLVDGECFNLLRVSCSSFCGFFLIFPLRITG 244
R+ + + D C R+SCSS C + ++ RI G
Sbjct: 114 RHPLMFSFADENCPKACRLSCSSLCQYHNVWRTRIIG 150
>U23510-13|AAK71392.2| 425|Caenorhabditis elegans Hypothetical
protein R12C12.8a protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 354 RNNIYWPLVDGECFNLLRVSCSSFCGFFLIFPLRITG 244
R+ + + D C R+SCSS C + ++ RI G
Sbjct: 340 RHPLMFSFADENCPKACRLSCSSLCQYHNVWRTRIIG 376
>AL132895-2|CAC14404.1| 613|Caenorhabditis elegans Hypothetical
protein Y59A8A.2 protein.
Length = 613
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 151 LNEQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVET 318
L E + DD ++N E D + S SDSQ ++E ++ + +E E+
Sbjct: 33 LTENHTSDEEDDDFEVNPAENDAKTGSEADSGSDSQENSDEEESEDEENDEEEAES 88
>AF101318-6|AAC69348.2| 946|Caenorhabditis elegans Hypothetical
protein Y73C8C.8 protein.
Length = 946
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 181 QDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAK 285
+DD +L +IET + ++ K S +S+ K +K A K
Sbjct: 614 RDDLRLEKIETKHLRKSLKLSQQESEEKSQKIAGK 648
>AF025469-1|AAG00030.3| 578|Caenorhabditis elegans Hypothetical
protein W09B6.3 protein.
Length = 578
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 142 PLYLNEQKIE-KSKQDDSKLNRIETDQVDETSKYSAS 249
P+ +N + + KS + +SKLN IE + E + YS+S
Sbjct: 3 PVLVNSRPLRVKSHESESKLNLIEQEDQFEGANYSSS 39
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,918,904
Number of Sequences: 27780
Number of extensions: 300056
Number of successful extensions: 1075
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -