Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0446
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58320.2 68418.m07301 kinase interacting protein-related low ...    31   0.72 
At5g58320.1 68418.m07300 kinase interacting protein-related low ...    31   0.72 
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1...    31   0.95 
At5g55820.1 68418.m06956 expressed protein                             30   1.7  
At3g20210.1 68416.m02561 vacuolar processing enzyme, putative / ...    29   2.2  
At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    29   2.2  
At3g28770.1 68416.m03591 expressed protein                             29   2.9  
At3g49340.1 68416.m05394 cysteine proteinase, putative contains ...    28   6.7  
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ...    28   6.7  
At5g14540.1 68418.m01704 proline-rich family protein contains pr...    27   8.9  

>At5g58320.2 68418.m07301 kinase interacting protein-related low
           similarity to kinase interacting protein 1 [Petunia
           integrifolia] GI:13936326
          Length = 558

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +1

Query: 160 QKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKR 288
           +++EKSK DD+KL  ++ D ++   K +A+   WK +  A KR
Sbjct: 324 KEVEKSKSDDAKLKSLQ-DMLESAQKEAAA---WKSKASADKR 362


>At5g58320.1 68418.m07300 kinase interacting protein-related low
           similarity to kinase interacting protein 1 [Petunia
           integrifolia] GI:13936326
          Length = 490

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +1

Query: 160 QKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKR 288
           +++EKSK DD+KL  ++ D ++   K +A+   WK +  A KR
Sbjct: 324 KEVEKSKSDDAKLKSLQ-DMLESAQKEAAA---WKSKASADKR 362


>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
           putative / heat shock protein clpB, putative /
           HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
           [Phaseolus lunatus]
          Length = 968

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 169 EKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
           +  K    +LNRIET+ V    K +    QW++E+    R     +E++
Sbjct: 508 DTDKASRERLNRIETELVLLKEKQAELTEQWEHERSVMSRLQSIKEEID 556


>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +1

Query: 163  KIEKSKQDDSKLNR--IETDQVDETSKYSASDSQWKYEKEAAKR-TTRNTQEVE 315
            K+E++KQ+   L +  IE  + +E  K   ++  WK E E  K+   R  +E E
Sbjct: 1547 KLERAKQEQENLKKQEIEKKKKEEDRKKKEAEMAWKQEMEKKKKEEERKRKEFE 1600


>At3g20210.1 68416.m02561 vacuolar processing enzyme, putative /
           asparaginyl endopeptidase, putative similar to
           asparaginyl endopeptidase (VmPE-1) [Vigna mungo]
           GI:4589396; contains Pfam profile PF01650: Peptidase C13
           family; identical to cDNA vacuolar processing enzyme
           delta preproprotein (At3g20210)  GI:24850432
          Length = 466

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 399 MSVN**NVVKILTVSRNNIYWPLVDG-ECFNLLRVSCSSFCGFFLIFPLRITG 244
           +SV   NV+ +LT +R     PLVD  +CF  L  S  + CG  + + L+ TG
Sbjct: 390 LSVKQTNVLNLLTSTRTT-GQPLVDDWDCFKTLVNSFKNHCGATVHYGLKYTG 441


>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +1

Query: 61  EPTQNYFTPA-QFLSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDETSK 237
           +P +N+ +P  QFL  +  P +  R+     L E  I +S  DD++L+    ++ +E  K
Sbjct: 207 DPKKNFLSPRPQFLHYKPNPRIEKRFDECKQLEELFISESSSDDTELS---VEESEEQEK 263

Query: 238 YSASDSQWKYEKEAAKRTTRNTQE 309
             A +   + E E  +++   + E
Sbjct: 264 DGAEEVVVEEETEDVEQSEAESDE 287


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 169  EKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEVE 315
            EKS+  + + ++ + ++VD+  K S+ D Q K EKE  +   +  ++ E
Sbjct: 1161 EKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEKEMKESEEKKLKKNE 1209


>At3g49340.1 68416.m05394 cysteine proteinase, putative contains
           PS00640: Eukaryotic thiol (cysteine) proteases
           asparagine active site; similar to cysteine proteinase
           GI:535454 from [Alnus glutinosam]
          Length = 341

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 166 IEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRN-TQEVETF 321
           +EK +Q  S+ NR+ +D  ++TS++    +  K+ +     T +  T +V  F
Sbjct: 32  VEKHEQWMSRFNRVYSDDSEKTSRFEIFTNNLKFVESINMNTNKTYTLDVNEF 84


>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
           protein similar to UBP1 interacting protein 1a
           [Arabidopsis thaliana] GI:19574236; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 382

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +1

Query: 157 EQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYEKEAAKRTTRNTQEV 312
           E+K EKSK+   K   +E +  +++   S S  + K  K+  KR++  ++E+
Sbjct: 47  EEKPEKSKKKSKKYEEVEEE--EKSPSPSPSPKKSKESKKKHKRSSDESEEI 96


>At5g14540.1 68418.m01704 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 547

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 2   TRKIATPTYQTDEQFSQYRQNPPKTISH 85
           T+ +  P YQ   Q  QY Q PP  + H
Sbjct: 320 TQSLHQPPYQPPPQQPQYPQQPPPQLQH 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,528,323
Number of Sequences: 28952
Number of extensions: 259768
Number of successful extensions: 688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)