Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0445
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.8  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 451 VWNNQWNCG*SARYEGKVYYVCCLEP 528
           + N +W+         ++YY CC EP
Sbjct: 192 ITNGEWDLLGVPGKRNEIYYNCCPEP 217


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 491 TRGKFIMSVAWSPDGR 538
           TRG   +S++W  DGR
Sbjct: 635 TRGDLPLSISWLKDGR 650


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 10  SYLNISKNAVKYN 48
           +YL I K+AVK+N
Sbjct: 172 TYLRIKKHAVKFN 184


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 485 LDTRGKFIMSVAW 523
           +D RGK ++S AW
Sbjct: 149 VDKRGKIMLSFAW 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,754
Number of Sequences: 438
Number of extensions: 3583
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)