Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0444
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 96 3e-21
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 90 2e-19
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.070
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 29 0.28
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 28 0.86
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 3.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 3.5
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 26 3.5
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.6
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.1
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 6.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.1
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 25 8.0
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 8.0
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 95.9 bits (228), Expect = 3e-21
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
Frame = +1
Query: 190 PRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 363
P KV K MG +I +RS++KPF+KVVNYNHLMPTRY ++ K +A K+P +R
Sbjct: 50 PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109
Query: 364 LRFNTRVRFEERYKSGKNKWFFQKLRF 444
R + FEE+Y+SGK+ WFF LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136
Score = 69.3 bits (162), Expect = 3e-13
Identities = 27/58 (46%), Positives = 42/58 (72%)
Frame = +3
Query: 42 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDG 215
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP + + G
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 89.8 bits (213), Expect = 2e-19
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +1
Query: 190 PRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 363
P KV K MG +I KRS++KPF+KV+NYNHLMPTRY ++ K + +P++R
Sbjct: 50 PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109
Query: 364 LRFNTRVRFEERYKSGKNKWFFQKLRF 444
+ + FEE+Y++GK+ WFF LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136
Score = 72.9 bits (171), Expect = 2e-14
Identities = 29/58 (50%), Positives = 43/58 (74%)
Frame = +3
Query: 42 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDG 215
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP + + G
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMG 58
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.070
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +3
Query: 33 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 134
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 29.5 bits (63), Expect = 0.28
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -1
Query: 330 CAEFFKAEVNCITCWHQVIIVYNLHERLYLGPLVDFILSHPLVHFPXGTCRY 175
CA+F E N + WH YNL R Y + D + P G C Y
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLPQTRLCYGACVY 820
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 27.9 bits (59), Expect = 0.86
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 214 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 348
G + I R K P K+VNYNH + + +F K D+ DP
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 48 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 131
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 1.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 130 TKVPPTSRTGMLSSLVSTGTPRKVHKRM--GKNKIHKRSKIKPFVKVVNYNHLMP 288
T+ PP+ + LSS S+ + H+R+ GKNK +K + F V +Y P
Sbjct: 113 TEKPPSMKEKDLSSNSSSQHDKAFHERVDQGKNK-SSTTKYQEFRTVADYREFSP 166
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 148 LSEVPSS*FLTTIALRPAYRPLKTSTTLPG 59
L E+P + F T+ AY P S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 345 VFQVFCAEFFKAEVNCITCWHQVIIVYNLHERLY 244
V+QVFC F A+ I +Q++ V NL E Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 21 VREYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 131
V+ Y ++ G + GK+V+++SG A K+ + + D
Sbjct: 37 VQPYSTESGMLFHAGKLVIIMSGLPARGKSNIAVSID 73
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 307 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 441
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 196 KVHKRMGKNKIHKRSKIKPFVKVV 267
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -1
Query: 108 PCDPRTGH-LRPALLYPASLSYPSWRDIPLP 19
P R H + P PAS S+PS +D P P
Sbjct: 367 PTSLRVAHPIIPQRASPASQSFPSLQDTPSP 397
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 301 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 417
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 301 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 399
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +1
Query: 244 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 381
+ PF K Y H + T + S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 301 LYNVLASSDYSLQPSRKALSWTSCGFY 221
LY L+ S + P R W SC FY
Sbjct: 246 LYRGLSVSMLKVAPGRYECLWLSCHFY 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,991
Number of Sequences: 5004
Number of extensions: 41048
Number of successful extensions: 136
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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