Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0444
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)             109   1e-24
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                28   3.6  
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)               28   4.7  
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.7  
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)                   28   4.7  
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)                 28   4.7  
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                   28   4.7  
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_55408| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)              27   6.2  
SB_21087| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)              27   6.2  
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  27   6.2  
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)                   27   6.2  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               27   8.2  

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score =  109 bits (262), Expect = 1e-24
 Identities = 54/85 (63%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
 Frame = +1

Query: 190 PRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKK 363
           P KV KRMGK +  KRSK+KPFVKV NYNHLMPTRY+VD   +K    KD+ +DPA +KK
Sbjct: 50  PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109

Query: 364 LRFNTRVRFEERYKSGKNKWFFQKL 438
                +   EERYKSGKNKWFFQKL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134



 Score = 93.5 bits (222), Expect = 8e-20
 Identities = 41/71 (57%), Positives = 54/71 (76%)
 Frame = +3

Query: 42  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE 221
           MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP +  +  GK+
Sbjct: 1   MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60

Query: 222 *NPQEVQDKAF 254
              +  + K F
Sbjct: 61  RTAKRSKVKPF 71


>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -3

Query: 196 SXGYLSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIILPILEGYSL 23
           S   +S+ A+ + PY    +P+S FL ++   P   Y+PL      P  + L     Y  
Sbjct: 9   SLSLVSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFLQAPPSYPY 68

Query: 22  TLVP 11
             +P
Sbjct: 69  KPLP 72


>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 280 SDYSLQPSRKALSWTSCG 227
           S Y ++P  K+L W SCG
Sbjct: 2   SSYRIKPKNKSLGWVSCG 19


>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 328 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 444
           +KDL  + P   +K  FN  +  E R++ G  K F+++LRF
Sbjct: 2   SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42


>SB_14764| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 820

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 229 GFYSFPSSCALSXGYLSIPATKACPYGLSEVPSS 128
           G+   PS+     GY  +P+ K    G  EVPSS
Sbjct: 332 GYTGVPSNKKSGTGYTGVPSNKKPGTGYKEVPSS 365



 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 295 NVLASSDYSLQPSRKALSWTSCGFYSFPSSCALSXGYLSIPATKACPYGLSEVPSS 128
           N    + Y+  PS K +S T  G+  FP +     GY  +P+ K    G   VPS+
Sbjct: 274 NKKPGTGYTGVPSNK-MSGT--GYKGFPPNKKSGTGYKGVPSNKKSVTGYKGVPSN 326


>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
          Length = 245

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125


>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623


>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
          Length = 366

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVKNFSKV 86


>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
          Length = 383

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 316 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 441
           ++ S  D +D +KRK++RF     FE   + YK+      FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281


>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 1170

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 14   HEGKGISLQDG*DNEAG*SSAGLKWPVRGSQGYRSQELRRRYLRQAVRACFRRW 175
            +EG G  L DG       +S GL+   R  + Y S +L    L+ A+   FR +
Sbjct: 990  NEGLGAVLSDGGTCVIAYASRGLRGAERNMENYSSHKLELLALKWAISEKFREY 1043


>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVENFSKV 86


>SB_55408| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)
          Length = 118

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 78  VLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQ 206
           VL+  Y    A V  N++EG SD   GH+       +  E AQ
Sbjct: 71  VLNPAYRTESAEVDSNFNEGASDLSTGHSRSKRFSDFAIEKAQ 113


>SB_21087| Best HMM Match : Adeno_E3_CR2 (HMM E-Value=0.4)
          Length = 118

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 78  VLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQ 206
           VL+  Y    A V  N++EG SD   GH+       +  E AQ
Sbjct: 71  VLNPAYRTESAEVDSNFNEGASDLSTGHSRSKRFSDFAIEKAQ 113


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 389 KRTRVLKRSFLRFAGSFRSFALNFSKL 309
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702


>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
          Length = 105

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 27  EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 131
           ++P+ ++GK  K G  V V+ GRY G   ++V+  D
Sbjct: 58  DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 325 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 441
           SAK+L++  +RK+  +NT    E RY+  K K   Q  R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,187,569
Number of Sequences: 59808
Number of extensions: 312373
Number of successful extensions: 890
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)