Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0444
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 113 8e-26
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 113 8e-26
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 1.4
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.4
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 28 3.1
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 28 3.1
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical pr... 27 5.5
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 7.2
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 7.2
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 7.2
Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical pr... 27 9.5
U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical pr... 27 9.5
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 9.5
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 9.5
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 9.5
L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical p... 27 9.5
AF067220-2|AAC16978.1| 588|Caenorhabditis elegans Hypothetical ... 27 9.5
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 113 bits (271), Expect = 8e-26
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +1
Query: 190 PRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 363
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 364 LRFNTRVRFEERYKSGKNKWFFQKLRF 444
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 91.9 bits (218), Expect = 2e-19
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +3
Query: 42 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE 221
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP + ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 113 bits (271), Expect = 8e-26
Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +1
Query: 190 PRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 363
P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K
Sbjct: 50 PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109
Query: 364 LRFNTRVRFEERYKSGKNKWFFQKLRF 444
+ +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 91.9 bits (218), Expect = 2e-19
Identities = 41/60 (68%), Positives = 49/60 (81%)
Frame = +3
Query: 42 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE 221
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP + ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 72 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE*NPQEVQDKA 251
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 252 FREGCKL 272
R+G L
Sbjct: 231 IRQGNSL 237
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 72 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE*NPQEVQDKA 251
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 252 FREGCKL 272
R+G L
Sbjct: 231 IRQGNSL 237
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 72 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE*NPQEVQDKA 251
++ ++G +G KA+ Y + D PYG + + G+ Y +A D +P +VQ
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY--MAAHVDN---SPAQVQSIT 230
Query: 252 FREGCKL 272
R+G L
Sbjct: 231 IRQGNSL 237
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 48 KIMKPGKVVLVLSGRYAGRKAIVVK 122
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
protein F15D3.1a protein.
Length = 3674
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 160 MLSSLVSTGTPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF 309
ML S ST P+K K+ K+ +++++ +V V NHL+ T D+
Sbjct: 1 MLFSGASTAKPKKDEKKDKKSDRDPKNELQEWVFVRWANHLLGTERLTDY 50
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
protein F15D3.1a protein.
Length = 3674
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 160 MLSSLVSTGTPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF 309
ML S ST P+K K+ K+ +++++ +V V NHL+ T D+
Sbjct: 1 MLFSGASTAKPKKDEKKDKKSDRDPKNELQEWVFVRWANHLLGTERLTDY 50
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 160 MLSSLVSTGTPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF 309
ML S ST P+K K+ K+ +++++ +V V NHL+ T D+
Sbjct: 1 MLFSGASTAKPKKDEKKDKKSDRDPKNELQEWVFVRWANHLLGTERLTDY 50
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 108 PCDPRTGHLRPALLYPASLSYPS 40
P D TGH RPAL P PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572
>Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical
protein F45E6.4 protein.
Length = 333
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -3
Query: 289 LASSDYSLQPSRKALSWTSCGFYS--FPSSC-ALSXGYLSIPATKACPYGLSEVPSS*FL 119
LAS++Y + P + A ++ +CG + FP +C ++ + ++ C EVP S +L
Sbjct: 195 LASANYGMCPCQHAFAFPACGMETGFFPGTCPEMTCSSQDVNISETC----GEVPYSNYL 250
Query: 118 TTI 110
+
Sbjct: 251 MNL 253
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 220 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 321
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 220 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 321
NK KR KI K YNHL+P T+D+S K
Sbjct: 400 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 220 NKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 321
NK KR KI K YNHL+P T+D+S K
Sbjct: 426 NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>Z81540-2|CAB04403.1| 190|Caenorhabditis elegans Hypothetical
protein F46B3.2 protein.
Length = 190
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 241 WTSCGFY-SFPSSCALSXGYLSIPAT 167
W +C F+ + P SC L G ++ PAT
Sbjct: 112 WDNCPFFKNCPLSCGLCTGNVTTPAT 137
>U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical
protein C31H1.1 protein.
Length = 693
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 302 LTSALKNSAQKT*KTLQNVRSCVSTREYVLK 394
L AL+NSAQK L ++ + VST Y L+
Sbjct: 651 LFDALQNSAQKCGVALSDLMTAVSTSSYSLE 681
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 392 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 297
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 392 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 297
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 392 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 297
S+ T V + +SFL G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
>L10986-11|AAK93846.2| 203|Caenorhabditis elegans Hypothetical
protein F10E9.10 protein.
Length = 203
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 250 ALSWTSCGFYSFPSSCALSXGYLSIPATKACPY--GLSEV 137
+ SW Y SSC L+ ++ +P+ C G+S V
Sbjct: 76 SFSWLIIAIYYSSSSCVLTFNFMEMPSAVLCSLLGGISSV 115
>AF067220-2|AAC16978.1| 588|Caenorhabditis elegans Hypothetical
protein C33E10.5 protein.
Length = 588
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -1
Query: 108 PCDPRT-GHLRPALLYPASLSYP--SWRDI-PLP 19
PC P + PA+L+P S S P S RDI PLP
Sbjct: 324 PCVPNVIPRIEPAMLFPVSSSGPSSSERDISPLP 357
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,038,342
Number of Sequences: 27780
Number of extensions: 225795
Number of successful extensions: 721
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -