Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0444
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.2  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 187 TPRKVHKRMGKNKIHKRSKIKPF 255
           +PR   K + KN I  ++++ PF
Sbjct: 28  SPRTPIKNVYKNNIETKNQLSPF 50


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +1

Query: 28  NIPPRWV 48
           N+PPRW+
Sbjct: 676 NVPPRWI 682


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 124 ITTKVPPTSRTGMLSSLVSTGTP 192
           IT + PP   T      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 259 KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 351
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 259 KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 351
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 256 VKVVNYNHLMPTRYTV 303
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 256 VKVVNYNHLMPTRYTV 303
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
          protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 60 ASLSYPSWRDIPLPSCRF 7
          + L +P WR  P P   F
Sbjct: 39 SDLVHPHWRAFPAPGKHF 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,911
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)