Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0444
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...    86   1e-17
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)            85   3e-17
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)            84   6e-17
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    34   0.058
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    33   0.13 
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    33   0.13 
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    30   0.72 
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    29   1.7  
At1g66070.1 68414.m07499 translation initiation factor-related s...    29   1.7  
At4g35120.1 68417.m04992 kelch repeat-containing F-box family pr...    28   3.8  
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam...    27   6.7  
At5g19970.1 68418.m02377 expressed protein  ; expression support...    27   6.7  
At4g17210.1 68417.m02588 myosin heavy chain-related contains wea...    27   6.7  
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi...    27   8.9  
At3g23320.1 68416.m02941 hypothetical protein                          27   8.9  
At1g78280.1 68414.m09122 transcription factor jumonji (jmjC) dom...    27   8.9  

>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 39/86 (45%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
 Frame = +1

Query: 190 PRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKL 366
           P KV ++    K  K+S++K F+K+VNY HLMPTRYT+D   ++ +  D LK   K+   
Sbjct: 50  PSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTA 109

Query: 367 RFNTRVRFEERYKSGKNKWFFQKLRF 444
               + + EER+K+GKN+WFF KLRF
Sbjct: 110 LKEAKAKLEERFKTGKNRWFFTKLRF 135



 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 30/71 (42%), Positives = 50/71 (70%)
 Frame = +3

Query: 42  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE 221
           M K +K  K V++L GRYAG+KA+++K++D+GTSD+ YGH  VAG+ +YP +  ++D  +
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 222 *NPQEVQDKAF 254
              ++ + K F
Sbjct: 61  KTAKKSRVKCF 71


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score = 84.6 bits (200), Expect = 3e-17
 Identities = 38/86 (44%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
 Frame = +1

Query: 190 PRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKL 366
           P KV ++    K  K+S++K F+K+VNY HLMPTRYT+D   ++ +  D L+   K+   
Sbjct: 50  PSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAA 109

Query: 367 RFNTRVRFEERYKSGKNKWFFQKLRF 444
               + + EER+K+GKN+WFF KLRF
Sbjct: 110 LKEAKAKLEERFKTGKNRWFFTKLRF 135



 Score = 74.5 bits (175), Expect = 3e-14
 Identities = 29/71 (40%), Positives = 49/71 (69%)
 Frame = +3

Query: 42  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE 221
           M K +K  K V++L GRYAG+KA+++K++D+G  D+PYGH  VAG+ +YP +  ++D  +
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 222 *NPQEVQDKAF 254
              ++ + K F
Sbjct: 61  KTAKKSRVKCF 71


>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score = 83.8 bits (198), Expect = 6e-17
 Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
 Frame = +1

Query: 190 PRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDLKDPAKRKKL 366
           P KV ++    K  K+S++K F KV+NY H+MPTRYT+D   +   SA  +    K+   
Sbjct: 50  PSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTA 109

Query: 367 RFNTRVRFEERYKSGKNKWFFQKLRF 444
               + +FEER+K+GKN+WFF KLRF
Sbjct: 110 LKEAKAKFEERFKTGKNRWFFTKLRF 135



 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 32/71 (45%), Positives = 50/71 (70%)
 Frame = +3

Query: 42  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE 221
           M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH  VAG+ +YP +  ++D  +
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 222 *NPQEVQDKAF 254
              ++ + K F
Sbjct: 61  KTAKKSRVKCF 71


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 33.9 bits (74), Expect = 0.058
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +3

Query: 18  RVREYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 137
           R +  P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 77  RRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 33  PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 137
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +3

Query: 33  PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 137
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 370 FNTRVRFEERYKSGKNKWFF 429
           +N R + E+RYKS K KWF+
Sbjct: 58  YNKRNKKEQRYKSPKGKWFY 77


>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
            factor-related similar to CCAAT-box-binding transcription
            factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
            [Homo sapiens], GB:P53569 [Mus musculus]
          Length = 1056

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +1

Query: 208  RMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKK 363
            R  K K  KR +  PF  +  Y HL+      D    K   K   +P K+KK
Sbjct: 1000 RSKKKKKEKRKRKSPFASLEEYKHLIDQDEKED---SKTKRKATSEPTKKKK 1048


>At1g66070.1 68414.m07499 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 226

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 241 KIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 420
           +IKP+ K  +Y  L+ T   +  S     A D+KD A       N +++ E+   +GK K
Sbjct: 139 RIKPYEKSYHYIALLKT--IMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKK 196


>At4g35120.1 68417.m04992 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 389

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 253 KALSWTSCGFYSFPSSCALSXGYLSIPATKACPYGLSEVPSS*FLTTIAL---RPAYRPL 83
           ++LS  S  FYS  SS  +      I AT+ CPY    +P      T+A    + +  P+
Sbjct: 48  RSLSLVSKSFYSLLSSTEIYAARSHIGATEPCPYVCLWLPKKHRWFTLAEIEGKLSLEPV 107

Query: 82  KTSTTLP 62
           + S++ P
Sbjct: 108 RLSSSYP 114


>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 1566

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 157 GMLSSLVSTGTPRKVHKRMGKNKIHKRSKIKPFVKV 264
           G+ + L   G PR+VH R  K    K  ++  FV V
Sbjct: 346 GVTAELPENG-PRRVHPRFAKTSASKEKELSEFVAV 380


>At5g19970.1 68418.m02377 expressed protein  ; expression supported
           by MPSS
          Length = 363

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 39  WRDIPLPSCRFLQ 1
           W  +PLP CRFLQ
Sbjct: 334 WEWVPLPDCRFLQ 346


>At4g17210.1 68417.m02588 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P14105 myosin heavy chain,
           nonmuscle (Cellular myosin heavy chain) (NMMHC) [Gallus
           gallus]
          Length = 527

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 81  LSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPXESAQEDGKE*NPQEVQDKAFRE 260
           LSG     K+ + + YDE +S K    +    +D    E+ +  GKE   QE ++  + E
Sbjct: 292 LSGELKEAKSAMQEIYDEESSYKSLVGSLTVELDGVQRENRELKGKEKERQEAEEGEWVE 351

Query: 261 GCK 269
             +
Sbjct: 352 ASR 354


>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 611

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 184 GTPRKVHKRMGKNKIHKRSKIKPFVKVVNYN--HLMPTRYTVDFSFEKFSAKDLK 342
           GT   + K  G+N +   +K + F ++V+    HL+P  YT  F  E  SA+ L+
Sbjct: 517 GTANMMLKVYGRNDMFSEAK-ELFEEIVSRKETHLVPNEYTYSFMLEA-SARSLQ 569


>At3g23320.1 68416.m02941 hypothetical protein 
          Length = 191

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 53  NEAG*SSAGLKWPVRGSQG 109
           N AG   +GL+W +R SQG
Sbjct: 46  NHAGRQDSGLRWIIRNSQG 64


>At1g78280.1 68414.m09122 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam PF00646: F-box
           domain; contains Pfam PF02373: jmjC domain; similar to
           apoptotic cell clearance receptor PtdSerR (GI:11037740)
           [Mus musculus]
          Length = 916

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 206 LCTFRGVPVDTSDESMPV 153
           +CTF  +P+ T DE +PV
Sbjct: 524 VCTFHNLPLVTEDEKLPV 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,456,417
Number of Sequences: 28952
Number of extensions: 212949
Number of successful extensions: 603
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)