Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0443
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   4.8  
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    25   4.8  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   4.8  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.8  
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   4.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   8.3  

>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 164 YKRLTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 48
           Y   T + TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 189 FFLKGDGVTLFNGVFHPLDINYFNNNNTADHKVFIE 296
           F+   +GV L  GV   L   YF+   T+D +V ++
Sbjct: 194 FYRSENGVILTEGVNGLLSSKYFSRVETSDGEVLLD 229


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 155 LTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTYRKLSTF 30
           +T     K + +G   ++  +F+ D N+ F+N+ TY    +F
Sbjct: 190 MTIKMLEKRFKKG-EYTTLESFVKDLNQMFINAKTYNAPGSF 230


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 164 YKRLTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTY 48
           Y   T + TH+  G  +  S F+A    +  RFLNS  Y
Sbjct: 175 YTAYTTNVTHRGIGFSLIFSPFAALTRLYLARFLNSPQY 213


>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = -3

Query: 155 LTYSCTHKYYGEGVSCSSFSAFLVDFNERFLNS 57
           + Y+C +K+Y    + +  S++L++    FL++
Sbjct: 26  INYTCDNKFYSSPSTFALLSSYLIEKRLNFLHA 58


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +3

Query: 249 NYFNNNNT-ADHKVFIEDPIQVFDSINRF 332
           N  NN+NT A H +  E P +   S N F
Sbjct: 140 NALNNDNTSASHSLTDEQPFETDSSANLF 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,064,781
Number of Sequences: 5004
Number of extensions: 15814
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)