Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0443
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869     28   2.6  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    28   2.6  
01_06_0824 - 32243495-32244319,32244449-32244859                       27   6.0  
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...    26   7.9  

>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
          Length = 258

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +3

Query: 165 FKANHPFVFFLKGD--GVTLFNG-VFHPL 242
           F A+HPF+F ++ D  GV LF G V +PL
Sbjct: 229 FVADHPFLFLIREDMTGVVLFIGHVVNPL 257


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +3

Query: 159 LVFKANHPFVFFLKGD--GVTLFNG-VFHPL 242
           L F A+HPF+F ++ D  GV LF G V +PL
Sbjct: 686 LNFVADHPFMFLIREDVTGVILFIGHVVNPL 716


>01_06_0824 - 32243495-32244319,32244449-32244859
          Length = 411

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 165 FKANHPFVFFLKGD--GVTLFNG 227
           F A+HPF+F +K D  GV +F G
Sbjct: 380 FVADHPFMFLIKEDLTGVVVFAG 402


>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 4   IPGLQARLLKVESFL*VRLFKKRSLKSTRKALKLLQLTPSP 126
           IPG++ +++KV     + LFK++  K +R+  +L    PSP
Sbjct: 114 IPGVRFKVVKVSGVSLLALFKEKKEKPSRRRSQL--ALPSP 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,536,209
Number of Sequences: 37544
Number of extensions: 88454
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)