Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0443
         (364 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      29   1.1  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   27   3.4  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      27   3.4  
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      27   6.0  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       27   6.0  
SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44)       27   6.0  
SB_23370| Best HMM Match : Sulfate_transp (HMM E-Value=7.2)            27   6.0  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 153 QPLVFKANHPFVFFL---KGDGVTLFNGVFHPLD 245
           +PLVF+A+HPF+F +   K   V     V +P++
Sbjct: 312 EPLVFRADHPFLFLIQHCKSKCVLFMGRVMNPVE 345


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 149 YSCTHKYYGEGVSCS 105
           +SCTH YY +G+ CS
Sbjct: 242 HSCTHVYYNKGLWCS 256


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 146  SCTHKYYGEGVSCSSFSAFLVDFNERFLNSLTYRKLSTFRRRA--CSPGI 3
            +C HK Y  G+SC  ++    +  +  L     R+  + R+R   C  GI
Sbjct: 2063 TCCHKSYHVGISCGDYALSKTEIGQEHLVEKWMREDPSNRKRCPKCRTGI 2112


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 162 VFKANHPFVFFLKGD--GVTLFNG 227
           VF ANHPF+F ++ +  G  LF G
Sbjct: 348 VFYANHPFLFLIRHNDTGAVLFMG 371


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -3

Query: 86  VDFNERFLNSLTYRKLSTFRR 24
           VDFNE F  S T RKL T R+
Sbjct: 69  VDFNESFEQSCTKRKLLTKRK 89


>SB_37928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 31  KVESFL*VRLFKKRSLKSTRKALKLLQLTPSP*YL*VQL*VSRLYSKRTIPSYSS*KE 204
           KV  FL   + +K   +  R AL L+ L+P+   L V+        +R  PSYSS +E
Sbjct: 182 KVHFFL-SEITRKNYTRKGRGALMLIFLSPTSAELFVKSGTEFFNDRRNTPSYSSMRE 238


>SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44)
          Length = 393

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 146 SCTHKYYGEGVSCSSFSAFLVDFNERFLNSL 54
           SC HK  GEG+ C +     V+ +E+ +  L
Sbjct: 290 SCPHKEKGEGIYCFATLMENVELDEKLIREL 320


>SB_23370| Best HMM Match : Sulfate_transp (HMM E-Value=7.2)
          Length = 332

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 195 LKGDGVTLFNGVFHPLDINYFNNNNTADHKVFIEDPIQV 311
           +K DGV    G  HP+  N   +     H V ++   QV
Sbjct: 290 VKSDGVASLYGALHPVKSNGLASRYGVSHSVMLDGKSQV 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,805,683
Number of Sequences: 59808
Number of extensions: 113835
Number of successful extensions: 278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 570200590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)