Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0443
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   1.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    20   7.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   7.8  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 161 CIQSEPSLRILPKRRRCH 214
           C++  P + I P+RR+ H
Sbjct: 32  CVRVSPVITIEPRRRKFH 49


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 164 IQSEPSLRILPKRRRCHSF*RSF 232
           I+  PS+ +LP+   CH+   SF
Sbjct: 645 IRKMPSMPLLPRPISCHTTPDSF 667


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 67  F*IASLTESFLLLEGAPAAR 8
           F IAS+  +F++L  APA R
Sbjct: 493 FTIASIVGTFIILCEAPALR 512


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 310 TCIGSSIKTL 281
           TC+GSSIK +
Sbjct: 580 TCLGSSIKAM 589


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +3

Query: 249 NYFNNNN 269
           NY+NNNN
Sbjct: 316 NYYNNNN 322


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +2

Query: 140 CSCKSAACI 166
           C+CK+ AC+
Sbjct: 315 CTCKAVACL 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,860
Number of Sequences: 438
Number of extensions: 1229
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)