Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0443
         (364 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62170.1 68414.m07013 serpin family protein / serine protease...    28   2.1  
At2g14540.1 68415.m01628 serpin family protein / serine protease...    27   2.8  
At1g64010.1 68414.m07250 serpin, putative / serine protease inhi...    26   6.5  
At5g03870.1 68418.m00360 glutaredoxin family protein contains Pf...    26   8.6  
At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identica...    26   8.6  
At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identica...    26   8.6  

>At1g62170.1 68414.m07013 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           GI:9937311 from [Cucurbita maxima]; contains Pfam
           profile PF00079: Serpin (serine protease inhibitor)
          Length = 433

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 153 QPLVFKANHPFVFFLKGD--GVTLFNG-VFHP 239
           +P+ F A+HPF+F ++ +  G  LF G +F P
Sbjct: 400 KPIDFVADHPFLFLIREEQTGTVLFAGQIFDP 431


>At2g14540.1 68415.m01628 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 407

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 165 FKANHPFVFFLKGD--GVTLFNG-VFHPLDIN 251
           F A+HPF+F ++ D  G  LF G +F P +++
Sbjct: 370 FVADHPFLFLIREDKTGTLLFAGQIFDPSELS 401


>At1g64010.1 68414.m07250 serpin, putative / serine protease
           inhibitor, putative similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311; contains Pfam profile
           PF00079: Serpin (serine protease inhibitor)
          Length = 185

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +3

Query: 165 FKANHPFVFFLKGD--GVTLFNG-VFHP 239
           F A+HPF+F ++ D  G  LF G +F P
Sbjct: 154 FVADHPFLFMIREDKTGTVLFVGQIFDP 181


>At5g03870.1 68418.m00360 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 384

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 235 WKTPLKRVTPSPFRKNTK 182
           WKTP+K V  SP R ++K
Sbjct: 109 WKTPVKSVVESPKRGSSK 126


>At4g16845.2 68417.m02544 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 380

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 222 NGVFHPLDINYFNNNNTADH 281
           N V HP D N  NNNN  DH
Sbjct: 342 NSVDHPSDSN-TNNNNIVDH 360


>At4g16845.1 68417.m02543 vernalization 2 protein (VRN2) identical
           to vernalization 2 protein [Arabidopsis thaliana]
           gi|16945788|gb|AAL32135
          Length = 440

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 222 NGVFHPLDINYFNNNNTADH 281
           N V HP D N  NNNN  DH
Sbjct: 402 NSVDHPSDSN-TNNNNIVDH 420


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,371,642
Number of Sequences: 28952
Number of extensions: 77269
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)