Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0442
         (643 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    99   3e-23
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    61   7e-12
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    59   3e-11
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    59   3e-11
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    50   2e-08
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 99.1 bits (236), Expect = 3e-23
 Identities = 42/43 (97%), Positives = 43/43 (100%)
 Frame = +1

Query: 514 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA 642
           LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL+YA
Sbjct: 79  LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYA 121


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 61.3 bits (142), Expect = 7e-12
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +1

Query: 526 KHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
           + LC +CGDRASG HY   +CEGCKGFF+R++ K+  Y
Sbjct: 185 EELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVY 222


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 59.3 bits (137), Expect = 3e-11
 Identities = 19/35 (54%), Positives = 29/35 (82%)
 Frame = +1

Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
           C +CGD +SGKHY +++C+GC GFFKR++R++  Y
Sbjct: 38  CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQY 72


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 59.3 bits (137), Expect = 3e-11
 Identities = 19/35 (54%), Positives = 29/35 (82%)
 Frame = +1

Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
           C +CGD +SGKHY +++C+GC GFFKR++R++  Y
Sbjct: 38  CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQY 72


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = +1

Query: 532 LCSICGDRASGKHYGVYSCEGCKGFFKRT 618
           LC +CG+ A+G H+G ++CEGCK FF RT
Sbjct: 4   LCKVCGEPAAGFHFGAFTCEGCKSFFGRT 32


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 203 LDMATHKHPHITINSLHFSNGLRKL 129
           LD++ ++  ++  NS HF   L+K+
Sbjct: 47  LDLSNNRLRNVPDNSFHFLRSLKKV 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,416
Number of Sequences: 336
Number of extensions: 2308
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)