Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0442
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.0  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.3  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    25   9.3  
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    25   9.3  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 311 SIRISCSQWLHLQPHPMLNSIYNG*T*SQGLCR 409
           +I ++C+  LH+Q H  L SI       + LCR
Sbjct: 580 AIGLACNMRLHIQSHLSLQSINEDMDSDEALCR 612


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 178 GCLCVAMSSVAKKDKPTMSVTAL 246
           G L + +SS  KKDK T SVT L
Sbjct: 154 GILSLQLSSSNKKDKNTSSVTTL 176


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 231 HCRFIFLRHARHGHTQTSS 175
           HC F+FL   R GH  T +
Sbjct: 343 HCPFVFLHMGRDGHEITKN 361


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 618 CPLEEPFAAFTTVYSVMFARGSV 550
           CP+ + F AFT  ++  + RG V
Sbjct: 78  CPVSDKFQAFTNAFASNYYRGLV 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,179
Number of Sequences: 5004
Number of extensions: 38422
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)