Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0442
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0543 - 7039139-7039573                                           30   1.8  
07_03_1243 + 25134422-25135201                                         28   5.5  

>04_01_0543 - 7039139-7039573
          Length = 144

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 376 QWLNIESGFMSPMSPPEMKPDTAMLDGFRDDSTXXXXXXXXXXXXXLSGSKHLCSIC 546
           QW +   G  SP+ PP + P TA L G R  +T             L G+ + C  C
Sbjct: 3   QWRDGNGG-RSPLVPPPLSPPTAPLGGSRIVTTGHLQAALAMVGQPLDGNDNGCHRC 58


>07_03_1243 + 25134422-25135201
          Length = 259

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +1

Query: 517 SGSKHLCSICGDRASG-KHYGVYSC-----EGCKGFFKRTV 621
           S S+H+C IC  + SG   Y   +C     E C  +FK T+
Sbjct: 24  SASRHVCDICEAKLSGLVGYRCNACDFDIHEACADYFKETI 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,083,270
Number of Sequences: 37544
Number of extensions: 265077
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)