Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0442
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 72 3e-13
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 71 8e-13
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 71 1e-12
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 69 2e-12
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 68 7e-12
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 1e-11
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 66 2e-11
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 66 2e-11
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 64 7e-11
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 63 2e-10
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 63 2e-10
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 60 2e-09
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 60 2e-09
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 58 5e-09
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 37 0.016
SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 3.2
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031) 27 9.8
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 72.5 bits (170), Expect = 3e-13
Identities = 25/36 (69%), Positives = 35/36 (97%)
Frame = +1
Query: 532 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
LC +CGDR+SGKHYGV++C+GC+GFFKR++R++LTY
Sbjct: 22 LCRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTY 57
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 72.1 bits (169), Expect = 3e-13
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = +1
Query: 514 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA 642
++ S+ +C+ICGDR+SG HYGV SCEGCK FFKRTV+K L YA
Sbjct: 7 VTSSQRVCAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYA 49
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 70.9 bits (166), Expect = 8e-13
Identities = 25/35 (71%), Positives = 34/35 (97%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
C++CGD++SGKHYGV++CEGCK FFKR+VR++LTY
Sbjct: 243 CAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTY 277
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 70.5 bits (165), Expect = 1e-12
Identities = 24/36 (66%), Positives = 34/36 (94%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA 642
C++CGD++SGKHYGVY+CEGCK FFKR++R+ L+Y+
Sbjct: 79 CAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRSLSYS 114
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 69.3 bits (162), Expect = 2e-12
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
C +CGD +GKHYGV +CEGCKGFFKRTVRK+L Y
Sbjct: 42 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIY 76
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 67.7 bits (158), Expect = 7e-12
Identities = 22/35 (62%), Positives = 32/35 (91%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
C +CGDR+SGKHYG+Y+C+GC GFFKR++R++ +Y
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSY 42
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 67.3 bits (157), Expect = 1e-11
Identities = 24/36 (66%), Positives = 32/36 (88%)
Frame = +1
Query: 532 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
+C +C DRASG+HYGV +CEGCKGFFKR+VR+++ Y
Sbjct: 736 ICLVCNDRASGRHYGVMTCEGCKGFFKRSVRRNMVY 771
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 66.5 bits (155), Expect = 2e-11
Identities = 25/40 (62%), Positives = 32/40 (80%)
Frame = +1
Query: 520 GSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
G+ C +C D+A+G HYGV++CEGCKGFFKRTV+K L Y
Sbjct: 818 GAPPACVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEY 857
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 66.5 bits (155), Expect = 2e-11
Identities = 23/36 (63%), Positives = 31/36 (86%)
Frame = +1
Query: 532 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
LC +CGD +SG+HYGVY+C+GC GFF R+VR+D+ Y
Sbjct: 34 LCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVY 69
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 64.5 bits (150), Expect = 7e-11
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
C++CGD+++GKHYGV +CEGCK FFKRTVR + Y
Sbjct: 57 CAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNY 91
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 63.3 bits (147), Expect = 2e-10
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYA 642
C IC DRA+GKHYG SC+GCKGFF+R+VRK+ Y+
Sbjct: 10 CLICADRATGKHYGASSCDGCKGFFRRSVRKNHVYS 45
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 62.9 bits (146), Expect = 2e-10
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1
Query: 523 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDL 633
S+ C++CGD +SG HYG Y+CEGCK FFKRTV++ L
Sbjct: 3 SEEKCAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGL 39
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/37 (67%), Positives = 32/37 (86%), Gaps = 2/37 (5%)
Frame = +1
Query: 532 LCSICGDRASGKHYGVYSCEGCKGFFKRTV--RKDLT 636
+C+IC D+A+G+HYGV SCEGCKGFFKR+V +KD T
Sbjct: 197 ICAICLDKATGQHYGVTSCEGCKGFFKRSVQNKKDYT 233
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 60.1 bits (139), Expect = 2e-09
Identities = 20/32 (62%), Positives = 29/32 (90%)
Frame = +1
Query: 532 LCSICGDRASGKHYGVYSCEGCKGFFKRTVRK 627
+C +CGD+++GKHYGV++C+GC GFFKRT R+
Sbjct: 23 VCVVCGDQSTGKHYGVFACDGCSGFFKRTSRR 54
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 58.4 bits (135), Expect = 5e-09
Identities = 22/35 (62%), Positives = 28/35 (80%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTY 639
C++C +SG+HYGV++CEGCK FF RTVR LTY
Sbjct: 22 CAVCSAPSSGRHYGVFTCEGCKCFFNRTVRYKLTY 56
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 36.7 bits (81), Expect = 0.016
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +1
Query: 583 SCEGCKGFFKRTVRKDLTY 639
+C+GC+GFFKR+VR++L Y
Sbjct: 2 TCDGCRGFFKRSVRRNLAY 20
>SB_1172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -1
Query: 205 RSTWPHTNILTSL*THCTSVT--ASVNCQNSHVHNTIMKRDGHDQF 74
RSTW + ++ +L V +S+NC N++ + I+ DG+DQF
Sbjct: 130 RSTWVESLLVITLSRGILWVLEFSSLNCNNNNFNLNIVSVDGYDQF 175
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 185 KHPHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIY 72
+H +IT H SN R+ TRS+Y+H T+W+R Y
Sbjct: 571 RHEYITCG--HDSNPSRQR---TRSRYEHITKWTRPPY 603
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -3
Query: 212 FATLDMATH---KHPHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIY 72
+ TL TH ++ HIT+ + + ++K+TR Y+H T+W+R Y
Sbjct: 843 YITLWTRTHHGARYEHITVWT---RSPYEHITKWTRPPYEHITKWTRPPY 889
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -3
Query: 212 FATLDMATH---KHPHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIY 72
+ TL TH ++ HIT+ + ++K+TR Y+H T+W+R Y
Sbjct: 187 YITLWTRTHHGARYEHITVWT---RPPYEHITKWTRPPYEHITKWTRPPY 233
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 131 LSKFTRSQYDHETRWSRSIY 72
++K+TR Y+H T+W+R Y
Sbjct: 137 ITKWTRPPYEHITKWTRPPY 156
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 131 LSKFTRSQYDHETRWSRSIY 72
++K+TR Y+H T+W+R Y
Sbjct: 595 ITKWTRPPYEHITKWTRPPY 614
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 131 LSKFTRSQYDHETRWSRSIY 72
++K+TR Y+H T+W+R Y
Sbjct: 606 ITKWTRPPYEHITKWTRPPY 625
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -3
Query: 131 LSKFTRSQYDHETRWSRSIY 72
++K+TR Y+H T+W+R Y
Sbjct: 881 ITKWTRPPYEHITKWTRPPY 900
>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -3
Query: 212 FATLDMATH---KHPHITINSLHFSNGLRKLSKFTRSQYDHETRWSRSIY 72
+ TL TH ++ HIT+ + ++K+TR Y+H T+W+R Y
Sbjct: 131 YITLWTRTHHGARYEHITVWT---RPPYEHITKWTRPPYEHITKWTRPPY 177
>SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)
Length = 969
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 206 TLDMATHKHPHITINSLHFSNGLRK 132
T TH HPH TI+++H S+G+++
Sbjct: 198 TTRRTTHPHPHPTISNIH-SSGVQR 221
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,668,826
Number of Sequences: 59808
Number of extensions: 314773
Number of successful extensions: 851
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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