Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0442
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 33 0.16
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 31 0.65
At1g44050.1 68414.m05082 DC1 domain-containing protein contains ... 31 0.86
At2g02700.1 68415.m00210 DC1 domain-containing protein contains ... 30 1.1
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 30 1.5
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 29 2.0
At2g02680.1 68415.m00207 DC1 domain-containing protein contains ... 29 3.5
At1g61840.1 68414.m06978 DC1 domain-containing protein similar t... 29 3.5
At5g55780.1 68418.m06952 DC1 domain-containing protein contains ... 28 4.6
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 28 4.6
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 28 4.6
At3g26550.1 68416.m03314 DC1 domain-containing protein contains ... 28 4.6
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ... 28 4.6
At4g34840.1 68417.m04943 nucleosidase-related contains weak simi... 28 6.1
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 514 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT---VRKDL 633
L +K C +C HYG YSC C +F T +RKD+
Sbjct: 269 LPSAKWSCGVCRGEVDN-HYGAYSCNKCGDYFVHTRCALRKDV 310
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 526 KHLCSICGDRASGKHYGVYSCEGCKGFFKRT---VRKDL 633
K C +C R HYG YSC C +F T +RKD+
Sbjct: 195 KWSCGVCR-REVDNHYGAYSCIKCGDYFVHTRCALRKDV 232
>At1g44050.1 68414.m05082 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 530
Score = 30.7 bits (66), Expect = 0.86
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFF 609
C +C + +YG YSC C G+F
Sbjct: 160 CGVCHQQVDN-NYGAYSCNNCDGYF 183
>At2g02700.1 68415.m00210 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 499
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 514 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT---VRKDL 633
L K C IC R YG YSC CK + T +RKD+
Sbjct: 288 LPSGKWCCGICR-REIDSDYGAYSCNVCKDYAVHTRCALRKDI 329
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 514 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFF 609
LSG+ C +C ++ +YG Y+C C G+F
Sbjct: 249 LSGT-FSCGVCREQVDN-NYGAYACNKCDGYF 278
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +1
Query: 514 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFF 609
LS K C +C YG YSC C +F
Sbjct: 285 LSSGKWSCGVCRQEVDND-YGAYSCNKCDDYF 315
>At2g02680.1 68415.m00207 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 649
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 526 KHLCSICGDRASGKHYGVYSCEGCKGFFKRT 618
K C +C K YG Y+C C G+ T
Sbjct: 300 KWSCGVCRQEVDRK-YGAYTCNACNGYTVHT 329
>At1g61840.1 68414.m06978 DC1 domain-containing protein similar to
hypothetical protein GI:3184279 from [Arabidopsis
thaliana]; contains Pfam profile PF03107: DC1 domain
Length = 814
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 514 LSGSKHLCSICGDRASGKHYGVYSCEGCKGF---FKRTVRKDL 633
L + C +C G YG Y+CE CK + + +RKD+
Sbjct: 461 LQSEEWSCGVCRKSIDGD-YGAYTCEKCKDYVVHVRCALRKDV 502
>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 685
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFF 609
C +C + +YG YSCE C +F
Sbjct: 300 CGVCRQQVDN-NYGAYSCEICDDYF 323
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 514 LSGSKHLCSICGDRASGKHYGVYSCEGCKGFF 609
L K C +C + K YG YSC C +F
Sbjct: 313 LPSRKLSCGVCRKQVDNK-YGAYSCLECDAYF 343
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGF---FKRTVRKDLTY 639
C +C + G YG YSC C + + RKD+ Y
Sbjct: 328 CGVCRKKVDG-FYGAYSCSKCPSYAVHARCATRKDVWY 364
>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 681
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGFF 609
C +C R +YG YSC C +F
Sbjct: 289 CGVCHQRVDN-NYGAYSCGKCDAYF 312
>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 440
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 535 CSICGDRASGKHYGVYSCEGCKGF 606
C +C YG Y C+GC GF
Sbjct: 90 CGVCRQMLDSD-YGAYICKGCSGF 112
>At4g34840.1 68417.m04943 nucleosidase-related contains weak
similarity to MTA/SAH nucleosidase (Swiss-Prot:O51931)
[Buchnera aphidicola]
Length = 254
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 77 LIVTIAFHDRIVNV*ILTVYG 139
++ T+AFHDR + V +L +YG
Sbjct: 119 VVSTVAFHDRRIPVPVLDIYG 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,971
Number of Sequences: 28952
Number of extensions: 208309
Number of successful extensions: 564
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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