Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0440
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 239 3e-64
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 113 2e-26
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 77 2e-15
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 71 2e-13
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 67 2e-12
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 60 3e-10
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 38 0.002
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 34 0.018
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 32 0.071
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 32 0.094
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 0.88
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 28 1.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 28 1.2
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.5
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 2.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 2.7
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 2.7
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 4.7
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 8.2
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 8.2
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 25 8.2
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 239 bits (585), Expect = 3e-64
Identities = 113/151 (74%), Positives = 134/151 (88%)
Frame = +1
Query: 265 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 444
E DLY ++K L+R LE L++QE +IK++ ++LK+E + AQEEVKRIQSVPLVIGQFLEA
Sbjct: 5 EEIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEA 64
Query: 445 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 624
+DQNT IVGSTTGSNY VRILST+DRELLKPSASVAL +HSNALVD+LPPEADSSISML+
Sbjct: 65 IDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLR 124
Query: 625 ADEKPDVQYSDXGGMDTQKQEIREAVELPLT 717
DE+PDV Y+D GG+D QKQE+REAVELPLT
Sbjct: 125 PDERPDVSYADVGGLDVQKQEVREAVELPLT 155
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 113 bits (272), Expect = 2e-26
Identities = 57/144 (39%), Positives = 95/144 (65%), Gaps = 3/144 (2%)
Frame = +1
Query: 295 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV---PLVIGQFLEAVDQNTGI 465
K+QR+ + L ++EEY+++++R LK + QEE R+ + P+ +G E +D + I
Sbjct: 71 KMQRIHDHLLMEEEYVQNQER-LKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAI 129
Query: 466 VGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDV 645
V ST G YYV I+S +D+++L+P SV LH + ++V +L + D I++++ D+ P
Sbjct: 130 V-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTE 188
Query: 646 QYSDXGGMDTQKQEIREAVELPLT 717
Y+D GG+++Q QEI+EAVELPLT
Sbjct: 189 SYADIGGLESQIQEIKEAVELPLT 212
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 77.4 bits (182), Expect = 2e-15
Identities = 40/150 (26%), Positives = 80/150 (53%)
Frame = +1
Query: 265 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 444
E + KYK + + + ++ R+L K+Y ++++K +QSV +IG+ L+
Sbjct: 3 ERDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQ 62
Query: 445 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 624
+D IV +++G Y V + +D+ L V+L + ++ +LP E D + +
Sbjct: 63 LDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMS 122
Query: 625 ADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
++ D+ ++ GG++ Q +E+RE +ELPL
Sbjct: 123 IEDPGDISFAGVGGLNEQIRELREVIELPL 152
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 70.9 bits (166), Expect = 2e-13
Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Frame = +1
Query: 346 DEQRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDR 522
+ QRN L +EE++ +Q +G+ ++ + +N +V Y V I ID
Sbjct: 42 EAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDI 101
Query: 523 ELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAV 702
+ +KP+ VAL S L+ +LP + D +S++ ++ PD Y GG++ Q +EI+E +
Sbjct: 102 KEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVI 161
Query: 703 ELPL 714
ELP+
Sbjct: 162 ELPV 165
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 67.3 bits (157), Expect = 2e-12
Identities = 38/169 (22%), Positives = 88/169 (52%), Gaps = 21/169 (12%)
Frame = +1
Query: 271 EDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVD 450
++L ++ + L+ ++ ++ + + + E+ + ++ QE++ + +P ++G +E +D
Sbjct: 37 DELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILD 96
Query: 451 -------------QNT--------GIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHS 567
QN+ ++ ++T ++ ++ ++ E L P + ++K S
Sbjct: 97 MQPDEVDVQESANQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDS 156
Query: 568 NALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
++D LP E DS + ++ DEKP +YSD GG+ Q +E+ EA+ LP+
Sbjct: 157 YLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPM 205
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 60.1 bits (139), Expect = 3e-10
Identities = 28/92 (30%), Positives = 50/92 (54%)
Frame = +1
Query: 439 EAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISM 618
++ ++N ++ + + V + + ++ V ++ A+ LPP+ D S++M
Sbjct: 108 QSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTM 167
Query: 619 LQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
+Q +EKPDV Y D GG Q + +RE VELPL
Sbjct: 168 MQVEEKPDVTYGDVGGCKEQIERLREVVELPL 199
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPLT 717
E P+V +SD GG + KQ+++E+VE PLT
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLT 569
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 643 VQYSDXGGMDTQKQEIREAVELP 711
V +S GG+ Q +IR+ VELP
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELP 298
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 34.3 bits (75), Expect = 0.018
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPL 714
E P+V++ D GG++ K+E+RE V++P+
Sbjct: 490 EVPNVRWEDIGGLEEVKRELRETVQMPV 517
Score = 30.7 bits (66), Expect = 0.22
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 640 DVQYSDXGGMDTQKQEIREAVELPL 714
+V Y D GG Q +IRE VELPL
Sbjct: 220 EVGYDDIGGCRRQMAQIRELVELPL 244
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 32.3 bits (70), Expect = 0.071
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 477 GAANYACILINCLK-KLSNDKRNRLYALYFFLCMQIFFLQVSLFIFNVLFLY 325
G Y C+++ + ++N +N+ A FF C+ + F Q++L+ +F Y
Sbjct: 182 GHFQYNCVMLGLVMYAIANLLKNQYVAATFFFCLALTFKQMALYFAPPIFFY 233
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.094
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 565 SNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
+N +D + S+++ EKP+V++ D G++ K+ ++E V LP+
Sbjct: 100 ANEALDSDAKKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPI 149
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 0.88
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 247 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKD--EQRNLKKEYLHAQEEVKRI 405
QSF E E E TK+K L R LE E +K E +E L ++E RI
Sbjct: 36 QSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSREKEKFRI 90
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 532 KPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQY-SDXGGMDTQKQE--IREAV 702
KPS++V+ S+A DV+ + S+I+ D K DV + + D Q +E I+E
Sbjct: 244 KPSSNVSRGTPSSAHSDVIEISSSSAIARTSGDRKDDVLFDTSTQRRDNQTREMFIQEQA 303
Query: 703 EL 708
+L
Sbjct: 304 QL 305
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -2
Query: 408 LYALYFFLCMQIFFLQVSLFIFNVLFL 328
+++L+FFLCM+ FF +++ F LFL
Sbjct: 360 IFSLFFFLCMRNFFPGFTIY-FPALFL 385
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 637 PDVQYSDXGGMDTQKQEIREAVELPL 714
P V + D GG++ K +R+ ++LPL
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPL 675
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +1
Query: 493 YVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMD 672
+V L T + +A++ K D L + D + +Q+D KPDV+ SD MD
Sbjct: 227 FVLFLFTFEETTFDRAAAID-RKQIQISNDQLTVKEDFDLKDMQSDIKPDVEKSD--AMD 283
Query: 673 TQKQEI 690
K ++
Sbjct: 284 DSKMKV 289
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 398 FTSSCACKYSFFKFRCSSLMYSSCTSKNSNILW 300
F C S +F C ++ TSK N+LW
Sbjct: 313 FPEPSFCSASKIRFNCDETYAATITSKYPNVLW 345
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 196 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 375
EK+ + K L A + E+E L + Q+ LE +E K E++ LK+E
Sbjct: 593 EKEKKRDKKKQLKLAKEEERQRREAERLAEQ--AAQKALEAKRQEEARKKREEQRLKREQ 650
Query: 376 LHAQEEVKR 402
Q+E++R
Sbjct: 651 EKKQQELER 659
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.7
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 3/154 (1%)
Frame = +1
Query: 190 LPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK 369
L +K + +TD+ +S +E S+++ TK + + + +K E+ L +
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVDDGMAASRYDTVKREKERLSE 376
Query: 370 EYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASV 549
QE+ + IQSV + +D+ + I+ + +L+ + +LK
Sbjct: 377 HLKSLQEQYEHIQSVYKNV-----LLDRESYIMRLGNKISENNELLN--ENRVLKEKLQT 429
Query: 550 ALHKHSNALVDVLPPEADSS---ISMLQADEKPD 642
L K + + + A++S +SM +ADE+ D
Sbjct: 430 YLDKKESNVTSKIKSTAENSSKPLSMNEADERKD 463
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 364 KKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 465
K ++ A E+ + VPL +F + VDQN G+
Sbjct: 51 KSKHSEAVVEILKSAKVPLKNKEFSDLVDQNIGV 84
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 394 VKRIQSVPLVIGQFLEAVDQN 456
+K+ +SVP + GQF+E V+ N
Sbjct: 193 LKKSKSVPRLRGQFMEPVEHN 213
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 271 EDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 411
E+ + QR +E QEE IK+E+ ++E +EEV +S
Sbjct: 333 EEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEE--EEEEEVPNYES 377
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 8.2
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +1
Query: 448 DQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQA 627
D+NT + SN + I ELL PS A+ +SN D+ P SS + A
Sbjct: 14 DENTDALFKLHTSNRKSANMFGIKSELLNPSELSAVGSYSN---DICPNRQSSSST--AA 68
Query: 628 DEKPDVQYSD 657
D P S+
Sbjct: 69 DTSPSTNASN 78
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 388 EEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHK 561
EE Q P +GQ+ + + Q I Y++RI+ ++LK S + +HK
Sbjct: 212 EENLDFQESPHYLGQYKKLLSQAMDIF-----KPYFIRIIKQTTDQVLKDSKKMDVHK 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,557
Number of Sequences: 5004
Number of extensions: 49696
Number of successful extensions: 183
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -