Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0440
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome regu... 235 2e-62
AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome re... 112 3e-25
AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome re... 83 3e-16
AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome re... 81 8e-16
AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome re... 81 8e-16
AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical ... 75 7e-14
AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical ... 75 7e-14
Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical pr... 68 8e-12
U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical pr... 67 1e-11
Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical pr... 53 2e-07
AC006683-1|AAK71395.4| 954|Caenorhabditis elegans Adenylyl cycl... 34 0.12
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 33 0.27
Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical p... 31 1.1
U39667-6|AAC69011.2| 640|Caenorhabditis elegans Disorganized mu... 30 1.4
AY095447-1|AAM23316.1| 640|Caenorhabditis elegans DIM-1(L) prot... 30 1.4
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z75550-10|CAA99927.2| 444|Caenorhabditis elegans Hypothetical p... 29 3.3
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 29 3.3
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 29 3.3
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 3.3
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 3.3
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 3.3
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 3.3
AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 29 3.3
AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical... 29 3.3
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 29 3.3
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 29 3.3
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 29 3.3
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p... 29 4.4
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p... 29 4.4
Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical pr... 29 4.4
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr... 29 4.4
L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna polym... 29 4.4
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein. 29 4.4
AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome as... 29 4.4
AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog... 29 4.4
AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein. 29 4.4
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 28 5.8
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr... 28 7.7
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 28 7.7
>U12965-4|AAA20608.1| 414|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 3 protein.
Length = 414
Score = 235 bits (576), Expect = 2e-62
Identities = 115/150 (76%), Positives = 126/150 (84%)
Frame = +1
Query: 268 SEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAV 447
S D Y K L+R L L+V E+YIK E RNL+KE LHAQEEVKRIQSVPLVIGQFLEAV
Sbjct: 33 SSDDYIKLTTLERQLAHLQVMEDYIKLETRNLEKELLHAQEEVKRIQSVPLVIGQFLEAV 92
Query: 448 DQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQA 627
DQN IVGSTTGSNYYVR+LS +DRELLKP SVALHK+SNALVDVLPPEADSSI ML+
Sbjct: 93 DQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRP 152
Query: 628 DEKPDVQYSDXGGMDTQKQEIREAVELPLT 717
DEKPD+ Y D GG+D QKQE+REAVELPLT
Sbjct: 153 DEKPDISYGDIGGLDMQKQEVREAVELPLT 182
>AF016440-3|AAB65906.1| 443|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 2 protein.
Length = 443
Score = 112 bits (269), Expect = 3e-25
Identities = 52/146 (35%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Frame = +1
Query: 286 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVK--RIQSVPLVIGQFLEAVDQNT 459
K K +R+ ++L +++E+I++++R +E +E K ++ P+ +G E +D
Sbjct: 64 KLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQH 123
Query: 460 GIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKP 639
IV + GS +YV I+S +D+E L+P SV L+ ++A++ VL + D +S+++ ++ P
Sbjct: 124 AIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAP 183
Query: 640 DVQYSDXGGMDTQKQEIREAVELPLT 717
Y+D GG+D Q QEI+EAVELPLT
Sbjct: 184 QETYADVGGLDQQIQEIKEAVELPLT 209
>AF067618-3|AAC19196.1| 430|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 5 protein.
Length = 430
Score = 82.6 bits (195), Expect = 3e-16
Identities = 51/193 (26%), Positives = 96/193 (49%), Gaps = 18/193 (9%)
Frame = +1
Query: 193 PEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKE 372
P KD + ++ + A + ++ +EDL ++ L + + + + I LK+
Sbjct: 6 PPKDGKNPEAMEVEDAIDEEILKMSTEDLKSRTHLLDNEIRIMRSEVQRINHSATTLKER 65
Query: 373 YLHAQEEVKRIQSVPLVIGQFLEAVD--QNT----------------GIVGSTTGSNYYV 498
E +K +++P ++ +E +D NT ++ ++T + Y++
Sbjct: 66 IKENTERIKVNKTLPYLVSNVVELLDLEDNTEEEGANVDLDAQKTKCAVIKTSTRATYFL 125
Query: 499 RILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQ 678
++ +D + LKP V ++K S +++ LP E DS + ++ DE+P QYSD GG D Q
Sbjct: 126 PVVGLVDPDELKPGDLVGVNKDSYLILEKLPAEYDSRVKAMEVDERPTEQYSDIGGCDKQ 185
Query: 679 KQEIREAVELPLT 717
QE+ EAV LP+T
Sbjct: 186 IQELIEAVVLPMT 198
>AF024493-9|AAV58871.1| 398|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform b
protein.
Length = 398
Score = 81.0 bits (191), Expect = 8e-16
Identities = 43/158 (27%), Positives = 88/158 (55%)
Frame = +1
Query: 241 GPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 420
GP ++ ++ L + +KL + +E + + ++ ++ + K++ ++ ++K +QSV
Sbjct: 6 GPAIVEDERTKALNSYRRKLAECRD-IEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQ 64
Query: 421 VIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEA 600
++G+ L+ + + IV +T G Y V +I++E LK V+L + ++ LP E
Sbjct: 65 IVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREV 124
Query: 601 DSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
D + + ++ ++ YSD GG+ Q +E+RE VELPL
Sbjct: 125 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPL 162
>AF024493-8|AAB70326.2| 406|Caenorhabditis elegans Proteasome
regulatory particle,atpase-like protein 4, isoform a
protein.
Length = 406
Score = 81.0 bits (191), Expect = 8e-16
Identities = 43/158 (27%), Positives = 88/158 (55%)
Frame = +1
Query: 241 GPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL 420
GP ++ ++ L + +KL + +E + + ++ ++ + K++ ++ ++K +QSV
Sbjct: 14 GPAIVEDERTKALNSYRRKLAECRD-IEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQ 72
Query: 421 VIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEA 600
++G+ L+ + + IV +T G Y V +I++E LK V+L + ++ LP E
Sbjct: 73 IVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREV 132
Query: 601 DSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
D + + ++ ++ YSD GG+ Q +E+RE VELPL
Sbjct: 133 DPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPL 170
>AF099922-3|AAK21407.2| 411|Caenorhabditis elegans Hypothetical
protein F56F11.4a protein.
Length = 411
Score = 74.5 bits (175), Expect = 7e-14
Identities = 37/144 (25%), Positives = 75/144 (52%)
Frame = +1
Query: 283 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 462
TK ++ ++ + + + +Q+ L + +EE+ + +G+ +A+D+
Sbjct: 31 TKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAMDKKKV 90
Query: 463 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPD 642
+V + Y V + +++D L VAL + A+ +VLP + D +S++ ++ PD
Sbjct: 91 LVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPD 150
Query: 643 VQYSDXGGMDTQKQEIREAVELPL 714
Y GG+DTQ +EI+E +ELP+
Sbjct: 151 STYEMVGGLDTQIKEIKEVIELPV 174
>AF099922-2|AAM48537.1| 432|Caenorhabditis elegans Hypothetical
protein F56F11.4b protein.
Length = 432
Score = 74.5 bits (175), Expect = 7e-14
Identities = 37/144 (25%), Positives = 75/144 (52%)
Frame = +1
Query: 283 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 462
TK ++ ++ + + + +Q+ L + +EE+ + +G+ +A+D+
Sbjct: 52 TKVEQAEQTVAEKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAMDKKKV 111
Query: 463 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPD 642
+V + Y V + +++D L VAL + A+ +VLP + D +S++ ++ PD
Sbjct: 112 LVKNHPDGKYIVDVAASVDISTLAAGTRVALRADNYAIHEVLPSKVDPLVSLMMVEKVPD 171
Query: 643 VQYSDXGGMDTQKQEIREAVELPL 714
Y GG+DTQ +EI+E +ELP+
Sbjct: 172 STYEMVGGLDTQIKEIKEVIELPV 195
>Z98866-1|CAB11558.1| 416|Caenorhabditis elegans Hypothetical
protein Y49E10.1 protein.
Length = 416
Score = 67.7 bits (158), Expect = 8e-12
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +1
Query: 352 QRN-LKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDREL 528
QRN L + +EE++++ +G+ +A+D+ +V Y V + +ID
Sbjct: 58 QRNELNTKVRMLKEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDVDKSIDINS 117
Query: 529 LKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVEL 708
L A VAL S AL +LP + D +S++ ++ PD Y GG+D Q +EI+E +EL
Sbjct: 118 LNTGARVALRADSYALHKLLPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIEL 177
Query: 709 PL 714
P+
Sbjct: 178 PV 179
>U88170-1|AAB42248.2| 438|Caenorhabditis elegans Hypothetical
protein C10G11.8 protein.
Length = 438
Score = 67.3 bits (157), Expect = 1e-11
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Frame = +1
Query: 295 KLQRMLEFLEVQEEYIKDEQ----RNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 462
K+ R+ ++L++++E+I + R L + Q+ V+ ++ P + + E D
Sbjct: 52 KMNRIHDYLQLEKEFITRQTSRHGRPLAVQKRREQQLVQSLRGTPTTLARVHELFDDEKH 111
Query: 463 IVGSTTGSN--YYVRILSTIDRELLKPSASVALHKHS------NALVDVLPPEADSSISM 618
V GS +YV ILS +D++LL+ +A V + +A+V VL + DS+
Sbjct: 112 AVVVVEGSRREWYVPILSIVDKDLLRLNALVMVKAGGMFKTVPSAIVGVLDDKIDSNAMG 171
Query: 619 LQADEKPDVQYSDXGGMDTQKQEIREAVELPLT 717
+ ++ P + D GG ++Q QE++E+VELPLT
Sbjct: 172 HKVEKTPKETFDDIGGCESQIQELKESVELPLT 204
>Z78012-4|CAB01414.1| 435|Caenorhabditis elegans Hypothetical
protein C52E4.4 protein.
Length = 435
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = +1
Query: 586 LPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
LP + D +++M+Q +EKPDV YSD GG Q +++RE VE PL
Sbjct: 155 LPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPL 197
>AC006683-1|AAK71395.4| 954|Caenorhabditis elegans Adenylyl cyclase
protein 4 protein.
Length = 954
Score = 33.9 bits (74), Expect = 0.12
Identities = 23/87 (26%), Positives = 42/87 (48%)
Frame = +1
Query: 310 LEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSN 489
+E L + E I D + L + + +EE K+I+ + + ++ A +G+ G G N
Sbjct: 780 VECLRLLNEIISDFDQIL--DQILDREEFKKIEKIKTISTTYMVA----SGLAGRECGDN 833
Query: 490 YYVRILSTIDRELLKPSASVALHKHSN 570
+V ++ RELL S +H +N
Sbjct: 834 SHVEAIALFARELLVKLESTNIHSFNN 860
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPL 714
EKP+V+++D G++ K+ ++EAV LP+
Sbjct: 111 EKPNVKWTDIAGLEGAKEALKEAVILPI 138
>Z49886-1|CAA90050.1| 809|Caenorhabditis elegans Hypothetical
protein C06A1.1 protein.
Length = 809
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 640 DVQYSDXGGMDTQKQEIREAVELPL 714
D+ Y D GG+ Q +I+E VELPL
Sbjct: 206 DIGYDDLGGVRKQLAQIKEMVELPL 230
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPL 714
E P+ +SD GG+ K+E++E V+ P+
Sbjct: 476 ETPNTTWSDIGGLQNVKRELQELVQYPV 503
>Z48334-9|CAA88314.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 511 TIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEI 690
TID E+L S +V + A+ P ++ E P+ +SD GG+ K+E+
Sbjct: 441 TIDAEVLN-SLAVTMENFRFAMGKSSPSALREAVV-----ETPNTTWSDIGGLQNVKREL 494
Query: 691 REAVELPL 714
+E V+ P+
Sbjct: 495 QELVQYPV 502
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 640 DVQYSDXGGMDTQKQEIREAVELPL 714
+V Y D GG+ Q +I+E VELPL
Sbjct: 205 EVGYDDLGGVRKQLAQIKEMVELPL 229
>Z48045-12|CAA88105.1| 810|Caenorhabditis elegans Hypothetical
protein C41C4.8 protein.
Length = 810
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 511 TIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEI 690
TID E+L S +V + A+ P ++ E P+ +SD GG+ K+E+
Sbjct: 441 TIDAEVLN-SLAVTMENFRFAMGKSSPSALREAVV-----ETPNTTWSDIGGLQNVKREL 494
Query: 691 REAVELPL 714
+E V+ P+
Sbjct: 495 QELVQYPV 502
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 640 DVQYSDXGGMDTQKQEIREAVELPL 714
+V Y D GG+ Q +I+E VELPL
Sbjct: 205 EVGYDDLGGVRKQLAQIKEMVELPL 229
>U39667-6|AAC69011.2| 640|Caenorhabditis elegans Disorganized
muscle protein 1,isoform a protein.
Length = 640
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +1
Query: 448 DQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQA 627
+Q G+ S Y++R++ T K +A +K + LPP ++++
Sbjct: 78 NQQKGMTEKPKHSEYFLRLMKTRQEMQKKLTAKNGSNKSVQQYLRKLPPSTSKEVTIIPV 137
Query: 628 DEKPD 642
KPD
Sbjct: 138 KMKPD 142
>AY095447-1|AAM23316.1| 640|Caenorhabditis elegans DIM-1(L)
protein.
Length = 640
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/65 (23%), Positives = 28/65 (43%)
Frame = +1
Query: 448 DQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQA 627
+Q G+ S Y++R++ T K +A +K + LPP ++++
Sbjct: 78 NQQKGMTEKPKHSEYFLRLMKTRQEMQKKLTAKNGSNKSVQQYLRKLPPSTSKEVTIIPV 137
Query: 628 DEKPD 642
KPD
Sbjct: 138 KMKPD 142
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 406 QSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDV 585
+++PL GQ E D N+ + N++ S + RE P+ V ++H A
Sbjct: 443 ETIPLTYGQIDEIPDDNSQSLPQRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTT 502
Query: 586 LPPEAD 603
P D
Sbjct: 503 TPKPTD 508
>Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 406 QSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDV 585
+++PL GQ E D N+ + N++ S + RE P+ V ++H A
Sbjct: 443 ETIPLTYGQIDEIPDDNSQSLPQRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTT 502
Query: 586 LPPEAD 603
P D
Sbjct: 503 TPKPTD 508
>Z75550-10|CAA99927.2| 444|Caenorhabditis elegans Hypothetical
protein T22C1.11 protein.
Length = 444
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 325 VQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIG 429
V+EE + E+ ++ KEY A + V +++ + LV+G
Sbjct: 216 VEEEVAQIEEEDVSKEYFDASKFVAQLEEMGLVLG 250
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 274 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 411
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 274 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 411
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 304 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 408
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 304 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 408
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 304 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 408
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 582 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 615
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 304 RMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 408
RM E ++ E + +E LK ++LH +EEV+R++
Sbjct: 822 RMNELTKIHE-MLMEEHDQLKVDHLHTEEEVERLK 855
>AL117202-32|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 406 QSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDV 585
+++PL GQ E D N+ + N++ S + RE P+ V ++H A
Sbjct: 443 ETIPLTYGQIDEIPDDNSQSLPQRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTT 502
Query: 586 LPPEAD 603
P D
Sbjct: 503 TPKPTD 508
>AL117202-31|CAD56610.1| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 406 QSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDV 585
+++PL GQ E D N+ + N++ S + RE P+ V ++H A
Sbjct: 443 ETIPLTYGQIDEIPDDNSQSLPQRQMRNWFKCDASQLPREPTYPTNFVDSYQHQPAATTT 502
Query: 586 LPPEAD 603
P D
Sbjct: 503 TPKPTD 508
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 274 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 411
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 274 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 411
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 274 DLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 411
++ K + + +++E EE DE N+K L QE+++R+Q+
Sbjct: 1418 EMIKKAQHIDQLMEMEPQLEELHPDELENIKAHRLAVQEQLQRLQA 1463
>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
protein ZK1098.10d protein.
Length = 1185
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 256 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 426
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
protein ZK1098.10b protein.
Length = 1157
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 256 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 426
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical
protein ZK1098.10a protein.
Length = 1139
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 256 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 426
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 347 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 404
>U41010-5|AAV28334.1| 975|Caenorhabditis elegans Hypothetical
protein T05A12.4b protein.
Length = 975
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 413 TDCMRFTSSCACKYSFFKFRCSSLMYSSCTSKNSN 309
++C + S+ C + F KF+ S CTS++ N
Sbjct: 389 SNCSQMCSAKICGWDFDKFKNEKFQCSKCTSESEN 423
>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical
protein T05A12.4a protein.
Length = 1622
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 413 TDCMRFTSSCACKYSFFKFRCSSLMYSSCTSKNSN 309
++C + S+ C + F KF+ S CTS++ N
Sbjct: 389 SNCSQMCSAKICGWDFDKFKNEKFQCSKCTSESEN 423
>L12018-1|AAA65458.1| 518|Caenorhabditis elegans Polk (dna
polymerase kappa) homologprotein 1 protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Frame = +1
Query: 286 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 465
++ + + LE L+++E +++ K Y H + R ++V + +F V+Q TG+
Sbjct: 214 RFDENENTLEDLKIEESICPKCEKSRKIYYDHVEFGTGREEAVREI--RF--RVEQLTGL 269
Query: 466 VGST-TGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVL 588
S SN+ +L+ I +L KP+ L NA+++ L
Sbjct: 270 TCSAGIASNF---MLAKICSDLNKPNGQYVLENDKNAIMEFL 308
>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
Length = 1157
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +1
Query: 256 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQ--RNLKKEYLHAQEEVKRIQSVPLVI 426
DEL SE++ + + L R + ++QE+ K E+ + LK++ + + E + VP+ +
Sbjct: 365 DELNSENMILRDENLSRQMVSEKMQEQITKHEEEIKTLKQKLMEKENEQEE-DDVPMAM 422
>AF016424-2|AAB65332.1| 720|Caenorhabditis elegans Peroxisome
assembly factor protein6 protein.
Length = 720
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 523 ELLKPSASVALHKHSNALVDVLPPEADSSIS-MLQADEKPDVQYSDXGGMDTQKQEIREA 699
+L+K V + + + + L + +S+ + + A + P+V++ D GG++ KQ + E+
Sbjct: 421 KLVKNGKKVKIEEKEEKVYEDLIDKRNSNFADAIGAPKIPNVRWEDVGGLEETKQTVLES 480
Query: 700 VELPL 714
+ L
Sbjct: 481 IRTNL 485
>AB012224-1|BAA76440.1| 720|Caenorhabditis elegans Pex6p homolog
protein.
Length = 720
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 523 ELLKPSASVALHKHSNALVDVLPPEADSSIS-MLQADEKPDVQYSDXGGMDTQKQEIREA 699
+L+K V + + + + L + +S+ + + A + P+V++ D GG++ KQ + E+
Sbjct: 421 KLVKNGKKVKIEEKEEKVYEDLIDKRNSNFADAIGAPKIPNVRWEDVGGLEETKQTVLES 480
Query: 700 VELPL 714
+ L
Sbjct: 481 IRTNL 485
>AB010968-1|BAA33544.1| 720|Caenorhabditis elegans PEX6 protein.
Length = 720
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Frame = +1
Query: 523 ELLKPSASVALHKHSNALVDVLPPEADSSIS-MLQADEKPDVQYSDXGGMDTQKQEIREA 699
+L+K V + + + + L + +S+ + + A + P+V++ D GG++ KQ + E+
Sbjct: 421 KLVKNGKKVKIEEKEEKVYEDLIDKRNSNFADAIGAPKIPNVRWEDVGGLEETKQTVLES 480
Query: 700 VELPL 714
+ L
Sbjct: 481 IRTNL 485
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +1
Query: 259 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKK--EYLHAQEEVKRIQ 408
E E+E+ K ++ +E ++ +EE +K E+ +KK E L A+EE +++
Sbjct: 889 EKEAEEENEKLIPERKRMEAIKEEEERVKAEREKVKKEEERLKAEEEKVKVE 940
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 256 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 408
D L+ +DL L+ + L+ + +++E LKKE E++R++
Sbjct: 170 DRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVR 220
>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
protein C23H4.6 protein.
Length = 1137
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 292 KKLQRMLEFLEVQEEYIKDEQR---NLKKEYLHAQEEVKRIQS 411
KKLQ + + +EVQ+E IK+ + NL+K + E+K +S
Sbjct: 324 KKLQELRDEVEVQDEEIKESRADVDNLRKIVNDLKHEIKMSES 366
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 256 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 408
D L+ +DL L+ + L+ + +++E LKKE E++R++
Sbjct: 170 DRLKIDDLLVTLSNLEAEINLLKRRIALLEEEVARLKKENFRLTSELQRVR 220
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,948
Number of Sequences: 27780
Number of extensions: 279629
Number of successful extensions: 1015
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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