Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0440
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 253 8e-68
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 114 5e-26
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 114 5e-26
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 81 5e-16
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 81 1e-15
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 73 2e-13
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 73 3e-13
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 71 1e-12
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 70 1e-12
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 55 4e-08
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 55 4e-08
At5g55490.1 68418.m06911 expressed protein 36 0.020
At1g65540.1 68414.m07435 calcium-binding EF hand family protein ... 36 0.027
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 35 0.047
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 34 0.11
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 33 0.25
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 32 0.44
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 31 0.58
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 31 0.58
At1g03080.1 68414.m00282 kinase interacting family protein simil... 31 0.58
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 31 0.76
At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 31 0.76
At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 31 0.76
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 30 1.3
At2g14680.1 68415.m01651 myosin heavy chain-related contains wea... 30 1.3
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 30 1.8
At5g32169.1 68418.m03692 hypothetical protein 30 1.8
At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /... 29 2.3
At1g56610.1 68414.m06511 syntaxin-related family protein similar... 29 2.3
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 29 3.1
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 29 4.1
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 29 4.1
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 28 5.4
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 28 5.4
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 28 5.4
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 28 5.4
At1g58120.1 68414.m06589 expressed protein 28 5.4
At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing, put... 28 7.1
At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing, put... 28 7.1
At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to ... 28 7.1
At1g77890.1 68414.m09078 expressed protein 28 7.1
At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains simi... 28 7.1
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 28 7.1
At4g01170.1 68417.m00155 hypothetical protein 27 9.4
At3g22790.1 68416.m02873 kinase interacting family protein simil... 27 9.4
At3g19520.1 68416.m02475 expressed protein contains Pfam profile... 27 9.4
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 253 bits (620), Expect = 8e-68
Identities = 121/151 (80%), Positives = 134/151 (88%)
Frame = +1
Query: 265 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEA 444
+ EDLY + K L+R LEF ++QEEY+KDEQ+NLK+E L AQEEVKRIQSVPLVIGQF+E
Sbjct: 26 DEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEM 85
Query: 445 VDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQ 624
VDQN GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L
Sbjct: 86 VDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLS 145
Query: 625 ADEKPDVQYSDXGGMDTQKQEIREAVELPLT 717
EKPDV Y+D GG D QKQEIREAVELPLT
Sbjct: 146 QSEKPDVSYNDIGGCDIQKQEIREAVELPLT 176
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 114 bits (275), Expect = 5e-26
Identities = 60/166 (36%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Frame = +1
Query: 241 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 399
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 400 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 579
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 580 DVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPLT 717
+L E D +S+++ ++ P Y+D GG++ Q QEI+EAVELPLT
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLT 209
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 114 bits (275), Expect = 5e-26
Identities = 60/166 (36%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Frame = +1
Query: 241 GPQSFDELESEDLYTKYK----KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEE---VK 399
GP++ L + TK K KL+R+ ++L ++EE++ +++R LK + A+E+ V
Sbjct: 45 GPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQER-LKPQEEKAEEDRSKVD 103
Query: 400 RIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALV 579
++ P+ +G E +D+N IV S+ G YYV ILS +D++ L+P S+ +H ++V
Sbjct: 104 DLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVV 163
Query: 580 DVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPLT 717
+L E D +S+++ ++ P Y+D GG++ Q QEI+EAVELPLT
Sbjct: 164 GILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLT 209
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 81.4 bits (192), Expect = 5e-16
Identities = 43/144 (29%), Positives = 78/144 (54%)
Frame = +1
Query: 283 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 462
++Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 SEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 463 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPD 642
IV +++G Y V S +D+E L V L + ++ LP E D + + ++ +
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN 135
Query: 643 VQYSDXGGMDTQKQEIREAVELPL 714
+ YS GG+ Q +E+RE++ELPL
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPL 159
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 80.6 bits (190), Expect = 1e-15
Identities = 44/144 (30%), Positives = 77/144 (53%)
Frame = +1
Query: 283 TKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG 462
T Y+K + LE + ++ R KKE+ ++++K +QSV +IG+ L +D
Sbjct: 16 TDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERL 75
Query: 463 IVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPD 642
IV +++G Y V S +D+E L V L + ++ LP E D + + ++ +
Sbjct: 76 IVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGN 135
Query: 643 VQYSDXGGMDTQKQEIREAVELPL 714
+ YS GG+ Q +E+RE++ELPL
Sbjct: 136 ISYSAVGGLGDQIRELRESIELPL 159
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 72.9 bits (171), Expect = 2e-13
Identities = 45/183 (24%), Positives = 92/183 (50%), Gaps = 21/183 (11%)
Frame = +1
Query: 232 AFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQS 411
+F G Q + ++D+ + L + L+ + + + ++K++ QE++K +
Sbjct: 10 SFEGDQ-LASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQ 68
Query: 412 VPLVIGQFLEAVD------------------QNTG---IVGSTTGSNYYVRILSTIDREL 528
+P ++G +E ++ Q G ++ ++T ++ ++ +D +
Sbjct: 69 LPYLVGNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDT 128
Query: 529 LKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVEL 708
LKP V ++K S ++D LP E DS + ++ DEKP Y+D GG++ Q QE+ EA+ L
Sbjct: 129 LKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVL 188
Query: 709 PLT 717
P+T
Sbjct: 189 PMT 191
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 72.5 bits (170), Expect = 3e-13
Identities = 43/173 (24%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Frame = +1
Query: 262 LESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 441
+ +ED+ + L + L+ + E + K++ QE++K + +P ++G +E
Sbjct: 20 MSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVE 79
Query: 442 AVDQNTG---------------------IVGSTTGSNYYVRILSTIDRELLKPSASVALH 558
++ N ++ ++T ++ ++ +D + LKP V ++
Sbjct: 80 ILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVN 139
Query: 559 KHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPLT 717
K S ++D LP E DS + ++ DEKP Y+D GG++ Q QE+ EA+ LP+T
Sbjct: 140 KDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMT 192
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 70.5 bits (165), Expect = 1e-12
Identities = 40/140 (28%), Positives = 71/140 (50%)
Frame = +1
Query: 295 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 474
+LQR+ ++ ++ L +EE++ +Q +G+ ++ + +N +V
Sbjct: 42 ELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 475 TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYS 654
Y V I +ID L PS VAL S L VLP + D +++++ ++ PD Y
Sbjct: 102 HPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD 161
Query: 655 DXGGMDTQKQEIREAVELPL 714
GG+D Q +EI+E +ELP+
Sbjct: 162 MIGGLDQQIKEIKEVIELPI 181
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 70.1 bits (164), Expect = 1e-12
Identities = 40/140 (28%), Positives = 71/140 (50%)
Frame = +1
Query: 295 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 474
+LQR L ++ ++ L +EE++ +Q +G+ ++ + +N +V
Sbjct: 42 ELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKV 101
Query: 475 TTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYS 654
Y V I +ID + PS VAL S L VLP + D +++++ ++ PD Y
Sbjct: 102 HPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYD 161
Query: 655 DXGGMDTQKQEIREAVELPL 714
GG+D Q +EI+E +ELP+
Sbjct: 162 MIGGLDQQIKEIKEVIELPI 181
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +1
Query: 586 LPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
LPP+ D S++M+ +EKPD YSD GG Q ++IRE VELP+
Sbjct: 183 LPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPM 225
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 55.2 bits (127), Expect = 4e-08
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 5/180 (2%)
Frame = +1
Query: 190 LPEKDDQVTDSKGLA-FAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLK 366
L E D + + GL ++ P E E +DL KK+ + E Q +L
Sbjct: 18 LDEDDIALLKTYGLGPYSAPIKKVEKEIKDLA---KKINDLCGIKESDTGLAPPSQWDLV 74
Query: 367 KEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTG----IVGSTTGSNYYVRILSTIDRELLK 534
+ QEE PL + + + + NT ++ + + V + + ++
Sbjct: 75 SDKQMMQEEQ------PLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIE 128
Query: 535 PSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
V + ++ + LPP+ D S++M+ +EKPDV Y+D GG Q +++RE VELP+
Sbjct: 129 EGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPM 188
>At5g55490.1 68418.m06911 expressed protein
Length = 537
Score = 36.3 bits (80), Expect = 0.020
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +1
Query: 196 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 375
+K ++ D + +A G Q +SE L LQR+ EF + Q+E + Q L++ +
Sbjct: 269 DKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQRLKEFSQEQQEDLAKRQEKLQEVH 328
Query: 376 LHAQEEVK 399
H E K
Sbjct: 329 DHLFENSK 336
>At1g65540.1 68414.m07435 calcium-binding EF hand family protein
similar to leucine zipper-EF-hand containing
transmembrane protein 1 [Homo sapiens] GI:4235226;
contains Pfam profile PF00036: EF hand
Length = 736
Score = 35.9 bits (79), Expect = 0.027
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 3/180 (1%)
Frame = +1
Query: 172 EEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDE 351
E + L D+V D+ G+ L SED ++ K R LE+LE+QEE IK+E
Sbjct: 463 EAVQATLSSLPDEVVDTVGVT--------ALSSEDSVSERK---RKLEYLEMQEELIKEE 511
Query: 352 QRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELL 531
+ ++E +E + V L A D N T + + LS +L
Sbjct: 512 EEEEEEEMAKMKESASSQKDVALDEMMASTAKDANEQAKAKTLEKHEQLCELSRA-LAVL 570
Query: 532 KPSASVALHKHSNALVDVLPPEADSSISMLQ---ADEKPDVQYSDXGGMDTQKQEIREAV 702
++SV++ + + ++ E D SM++ D++ D + + + + ++A+
Sbjct: 571 ASASSVSMEREE--FLKLVKKEVDLYNSMVEKGGTDDEEDARKAYLAAREDSDRSAQKAI 628
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 35.1 bits (77), Expect = 0.047
Identities = 13/28 (46%), Positives = 23/28 (82%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPL 714
EKP++++SD G+++ KQ ++EAV LP+
Sbjct: 125 EKPNIKWSDVAGLESAKQALQEAVILPV 152
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +1
Query: 511 TIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEI 690
+ID E+L A H H+ AL + P ++ E P+V ++D GG++ K+E+
Sbjct: 439 SIDAEILNSMAVTNEHFHT-ALGNSNPSALRETVV-----EVPNVSWNDIGGLENVKREL 492
Query: 691 REAVELPL 714
+E V+ P+
Sbjct: 493 QETVQYPV 500
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 640 DVQYSDXGGMDTQKQEIREAVELPL 714
DV Y D GG+ Q +IRE VELPL
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPL 227
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 32.7 bits (71), Expect = 0.25
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 511 TIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEI 690
+ID E+L A H H+ AL + P ++ E P+V + D GG++ K+E+
Sbjct: 439 SIDAEILNSMAVSNEHFHT-ALGNSNPSALRETVV-----EVPNVSWEDIGGLENVKREL 492
Query: 691 REAVELPL 714
+E V+ P+
Sbjct: 493 QETVQYPV 500
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 640 DVQYSDXGGMDTQKQEIREAVELPL 714
+V Y D GG+ Q +IRE VELPL
Sbjct: 203 EVGYDDVGGVRKQMAQIRELVELPL 227
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 613 SMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
S L A + P+V++ D GG++ K I + V+LPL
Sbjct: 645 SALGAPKVPNVKWDDVGGLEDVKTSILDTVQLPL 678
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/50 (24%), Positives = 32/50 (64%)
Frame = +1
Query: 259 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 408
+++ ++ K L++ +++ E++++ IKD+ L++E + EE+ RI+
Sbjct: 720 QMKESEISGKISGLEKKIQYAEIEKKSIKDKLPQLEQEERNIIEEIDRIK 769
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 640 DVQYSDXGGMDTQKQEIREAVELPL 714
+V Y D GG+ Q +IRE VELPL
Sbjct: 204 EVGYDDVGGVRKQMAQIRELVELPL 228
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPL 714
E P+V + D GG++ K+E++E V+ P+
Sbjct: 474 EVPNVSWEDIGGLENVKRELQETVQYPV 501
>At1g03080.1 68414.m00282 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = +1
Query: 259 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRI 405
E E E L K KL E E+Q + D +LK + HAQEE +R+
Sbjct: 380 EGEVESLKQKVSKLIEENEAYELQYQQCLDTIADLKLKLFHAQEETQRL 428
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +1
Query: 259 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFL 438
E E + L + KL + E L V+ + + L++E HAQ+ KR+ S L +
Sbjct: 292 ETEIKALKQELLKLNEVNEDLNVRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKI 351
Query: 439 EAVDQNTGIVGS 474
+ V++ ++ S
Sbjct: 352 KTVEEQCALLES 363
>At1g08270.2 68414.m00912 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 132
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPL 714
EKP+V+++ G+++ KQ ++EAV LP+
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPV 113
>At1g08270.1 68414.m00913 expressed protein low similarity to
SP|P46467 SKD1 protein (Vacuolar sorting protein 4b)
{Mus musculus}
Length = 126
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/28 (42%), Positives = 22/28 (78%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPL 714
EKP+V+++ G+++ KQ ++EAV LP+
Sbjct: 86 EKPNVKWTVVAGLESAKQALKEAVILPV 113
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +1
Query: 160 IEIMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY 339
++ + + L D+V D+ G+ L SED ++ + R LE+LE+QEE
Sbjct: 480 VKAEDAVRATLSSLPDEVVDTVGIT--------SLPSEDPVSERR---RKLEYLEMQEEL 528
Query: 340 IKDEQRNLKKEYLHAQEEVKRIQSV 414
IK+E+ +KE +EE+ RI+ V
Sbjct: 529 IKEEE---EKE----EEELTRIKDV 546
>At2g14680.1 68415.m01651 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P35579 myosin heavy chain,
nonmuscle type A (Cellular myosin heavy chain, type A,
Nonmuscle myosin heavy chain-A, NMMHC-A) [Homo sapiens]
Length = 629
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Frame = +1
Query: 166 IMEEIG--IILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEY 339
+ E++G ++L +++++ + + A Q DEL+ L +K++ ++E ++++EY
Sbjct: 385 LQEKVGALLLLSQQEERHLHEENVNAALQQKVDELQRNILQVTNEKVRTLMELAQLRQEY 444
Query: 340 --IKDEQRNLKKE 372
++D+ ++E
Sbjct: 445 QSLRDKMSGTREE 457
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +1
Query: 139 STRNLLAIEIMEEIGIILPEKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEF 318
S + L +++ EE+ + +K + + ++ L + E E E + K ++L++ E+
Sbjct: 521 SELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKF--EAEWEHIDVKREELRKEAEY 578
Query: 319 LEVQEE----YIKDEQRNLKKE 372
+ Q E Y+KDE+ N+K+E
Sbjct: 579 ITRQREAFSMYLKDERDNIKEE 600
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 18/21 (85%)
Frame = -2
Query: 387 LCMQIFFLQVSLFIFNVLFLY 325
LC ++F +++SL++F++ FLY
Sbjct: 204 LCSRLFVIRISLYLFSIQFLY 224
>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
and to SEC14 cytosolic factor (SP:P53989) [Candida
glabrata]
Length = 376
Score = 29.5 bits (63), Expect = 2.3
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +1
Query: 235 FAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSV 414
F + FD +S++ + Y K + + + +++ +E +KK Y H +V +
Sbjct: 54 FLKMRDFDLEKSKEAFLNYMKWRVDYKVDLISQKFKFEEYGEVKKHYPHGFHKVDK-TGR 112
Query: 415 PLVIGQFLEAVDQNTGIVGSTTGS--NYYVRILSTIDRELLKPSASVALHKHSNALVDVL 588
P+ I + L D N + +T NY+++ L P+ S+A KH ++ +L
Sbjct: 113 PIYI-ERLGMTDLNAFLKATTIERYVNYHIKEQEK-TMSLRYPACSIASDKHVSSTTTIL 170
>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
proteins At3g54160, At1g47920 (syntaxin SYP81),
At5g41830, At3g44180, At3g58890, At1g48390, At3g59270
[Arabidopsis thaliana]; contains a novel domain similar
to F-box that is shared among other proteins in
Arabidopsis
Length = 535
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -2
Query: 408 LYALYFFLCMQ--IFFLQVSLFIFN--VLFLYF*EL*HSLEFLVLCV*IFRFEFIKRLRT 241
L+ Y FL IF + F+++ VL L L ++ L+LC +F F F++
Sbjct: 10 LFGFYLFLMKSSSIFPQRPFTFLYDLWVLLLVLRFLFSLIQILILC--LFNFRFVEMTSN 67
Query: 240 SKRQAF*VCDL 208
+K++ +CDL
Sbjct: 68 NKKKKTELCDL 78
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 574 LVDVLPPEADSSISMLQADEKPDVQYSDXGGMDTQKQEIREAVELPL 714
LV P E + ++ D DV++ GG++T KQ + E V LPL
Sbjct: 59 LVQTNPYEDVIACDVINPDHI-DVEFGSIGGLETIKQALYELVILPL 104
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELP 711
E P V + D GG + K ++ EAVE P
Sbjct: 717 EVPKVNWEDVGGQNEVKNQLMEAVEWP 743
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 286 KYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGI 465
K +Q EFL +Q + E +L+K + +E +R+Q + + LE +++G+
Sbjct: 647 KLSSIQDENEFLRMQAIQNRAEMESLQKSLSFSLDEKERLQKLVDNLSNELEGKIRSSGM 706
Query: 466 VG 471
VG
Sbjct: 707 VG 708
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/51 (25%), Positives = 33/51 (64%)
Frame = +1
Query: 256 DELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQ 408
D LE ++ ++ +K+ + LE+ +EY++D +R +++ +EE+K+++
Sbjct: 581 DRLEVDERCSRLEKIDQ----LEIFQEYLRDLEREEEEKKKIQKEELKKVE 627
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 631 EKPDVQYSDXGGMDTQKQEIREAVELPL 714
E P V + D GG+ K+++++AVE P+
Sbjct: 279 EIPKVTWDDVGGLKDLKKKLQQAVEWPI 306
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 628 DEKPDVQYSDXGGMDTQKQEIREAVELPL 714
D P V++ D G+ K+ + EAV LPL
Sbjct: 231 DSTPGVRWDDVAGLSEAKRLLEEAVVLPL 259
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +1
Query: 472 STTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPP 594
+TT ++Y+R L+ + ++ KP+ S + +N +D+ PP
Sbjct: 25 NTTNRDHYLRQLNKLSHKISKPTNSSSSVSVANREIDLPPP 65
>At1g58120.1 68414.m06589 expressed protein
Length = 420
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 247 QSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 426
Q F+ + E + + + E +E +K+E+ + K EE+ R +S+ +V
Sbjct: 313 QKFEMYKIETVNDEMSLESEKMGMTEWLKENVKEEEYVVMKAEAEMVEEMMRSKSIKMVD 372
Query: 427 GQFLEAVDQNTGIVG 471
FLE + G+ G
Sbjct: 373 ELFLECKPKGLGLRG 387
>At5g04130.2 68418.m00400 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 519
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 490 YYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSIS 615
YY+R++ + R L S S ALH+HS+ L PP + S S
Sbjct: 13 YYLRLMGSRPR-LFSSSLSPALHRHSSTLSS--PPFSSPSPS 51
>At5g04130.1 68418.m00399 DNA topoisomerase, ATP-hydrolyzing,
putative / DNA topoisomerase II, putative / DNA gyrase,
putative similar to SP|O50627 DNA gyrase subunit B (EC
5.99.1.3) {Bacillus halodurans}; contains Pfam profiles
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein, PF00204: DNA topoisomerase II
(N-terminal region), PF00986: DNA gyrase, B subunit,
carboxyl terminus, PF01751: Toprim domain
Length = 732
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 490 YYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSIS 615
YY+R++ + R L S S ALH+HS+ L PP + S S
Sbjct: 13 YYLRLMGSRPR-LFSSSLSPALHRHSSTLSS--PPFSSPSPS 51
>At2g41880.1 68415.m05179 guanylate kinase 1 (GK-1) identical to
guanylate kinase (GK-1) [Arabidopsis thaliana]
gi|7861795|gb|AAF70408
Length = 387
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +1
Query: 316 FLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVI 426
FLEV Y++++++ L+KE + + V+ P+VI
Sbjct: 106 FLEVDSPYVREQKKLLRKEVVAWSKGVRGNAEKPIVI 142
>At1g77890.1 68414.m09078 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 259 ELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 375
EL++E L +KLQ +E L+ + + RNLK+ Y
Sbjct: 66 ELQNEKLAKLREKLQLQVEKLQQSKNTFRSLSRNLKERY 104
>At1g47760.1 68414.m05311 MADS-box protein (AGL102) contains
similarity to MADS-box protein GB:AAC26702 GI:3128222
from [Arabidopsis thaliana]; contains Pfam profile
PF00319: SRF-type transcription factor (DNA-binding and
dimerisation domain)
Length = 184
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 256 DELESEDLYTKYKKLQRMLEFL-EVQEEYIKDEQRNLKKEYLHAQEEVK 399
+ +++ +K + L + LE + E QE+ K +QRNL+K + ++K
Sbjct: 67 ERIQNPSASSKLRSLMKELEQIKEFQEDLRKKQQRNLEKSNMKENVDLK 115
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 265 ESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLE 441
E ED K ++ ++ E + +EE K E+ N KKE +EEVK ++ I Q +E
Sbjct: 189 EEEDKKKKEEEDKKKKEDEKKKEEEKKKEEENKKKEGEKKKEEVK-VEVTTKTITQVVE 246
>At4g01170.1 68417.m00155 hypothetical protein
Length = 444
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +1
Query: 295 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGS 474
K R + LE Q+E I+ R L A+ E R VPLV Q D +V +
Sbjct: 125 KASRDVPLLETQQEDIQQRVRKLSDS--KAETETLRRDDVPLVGSQEDSQRDNTVPLVRT 182
Query: 475 TTGSNYYVRILSTID 519
R+++ ID
Sbjct: 183 AEEIQLAKRVVAEID 197
>At3g22790.1 68416.m02873 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 27.5 bits (58), Expect = 9.4
Identities = 20/94 (21%), Positives = 42/94 (44%)
Frame = +1
Query: 196 EKDDQVTDSKGLAFAGPQSFDELESEDLYTKYKKLQRMLEFLEVQEEYIKDEQRNLKKEY 375
EK + + F+ + E E + L + K+ + + L ++ + + L++E
Sbjct: 306 EKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREV 365
Query: 376 LHAQEEVKRIQSVPLVIGQFLEAVDQNTGIVGST 477
HAQ+ KR+ S L L+ V+ ++ S+
Sbjct: 366 SHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESS 399
>At3g19520.1 68416.m02475 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 312
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 295 KLQRMLEFLEVQEEYIKDEQRNLKKEYLHAQEEVKRIQSVPL--VIGQFLE 441
KLQ + +E +EE ++ R LK + LH K + P+ IG+ +E
Sbjct: 217 KLQVLKVAIETKEEDVQPPNRRLKSKSLHVYITFKGLAKAPIGDEIGEHVE 267
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,545
Number of Sequences: 28952
Number of extensions: 243351
Number of successful extensions: 831
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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