Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0439
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0903 + 12285874-12285918,12286715-12286820,12286906-122869...    29   5.2  
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754...    28   9.0  

>03_02_0903 +
           12285874-12285918,12286715-12286820,12286906-12286961,
           12287062-12287113,12287182-12287282,12287891-12288287,
           12288852-12288937,12289061-12289078
          Length = 286

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 234 PRL*KYALKKGIFVNFVHLCDTY 166
           P++ +   KK +FVNF+ LC TY
Sbjct: 148 PQVLREGTKKTVFVNFMDLCKTY 170


>10_08_0259 +
           16274430-16274747,16275180-16275242,16275329-16275424,
           16275526-16275618,16276415-16276605,16276684-16276921,
           16277805-16277900,16278324-16278404,16278532-16278939,
           16279048-16279331,16279460-16279547,16279630-16279830,
           16280032-16280118,16280119-16280238,16280536-16280708,
           16281914-16282055,16282292-16282414,16282601-16282656,
           16282735-16283038,16283154-16283283,16283491-16283549,
           16283829-16284061,16285480-16285527,16285765-16285843,
           16285925-16286169,16286338-16286722
          Length = 1446

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 90  TCTLFFCRNCLSIRLXETSCS 28
           +C L FCRNCLS    E   S
Sbjct: 550 SCKLLFCRNCLSKNFGEEGLS 570


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,269,021
Number of Sequences: 37544
Number of extensions: 286216
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)