Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0438
         (728 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YKY1 Cluster: Putative uncharacterized protein; n=1; ...    35   1.8  
UniRef50_Q9NSG0-4 Cluster: Isoform 3 of Q9NSG0 ; n=7; Amniota|Re...    35   2.3  
UniRef50_Q9NSG0 Cluster: Rho GTPase-activating protein 8; n=41; ...    35   2.3  
UniRef50_A2PNS2 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  
UniRef50_Q22AP8 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_Q4YKY1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 75

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 104 YLYVQYELCSFEFVYNFVVFKMTCVTYL 21
           YLYV Y +CSF F YNF  F +  + Y+
Sbjct: 24  YLYVTYIICSFLFFYNFFEFIVIIIMYI 51


>UniRef50_Q9NSG0-4 Cluster: Isoform 3 of Q9NSG0 ; n=7; Amniota|Rep:
           Isoform 3 of Q9NSG0 - Homo sapiens (Human)
          Length = 643

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 23/58 (39%), Positives = 32/58 (55%)
 Frame = -2

Query: 616 LHRRLKHNVHSMMREVLKRHSLQMFSLHLCRCPRATAGPSPRGPLATVTKQYQTSLSF 443
           LH  LK++   +  EVL R+  ++ SLH  R P  T  P PR PL   T+Q+  SL +
Sbjct: 355 LHEHLKYDQLVIPPEVL-RYDEKLQSLHEGRTPPPTKTPPPRPPLP--TQQFGVSLQY 409


>UniRef50_Q9NSG0 Cluster: Rho GTPase-activating protein 8; n=41;
           Euteleostomi|Rep: Rho GTPase-activating protein 8 - Homo
           sapiens (Human)
          Length = 718

 Score = 34.7 bits (76), Expect = 2.3
 Identities = 23/58 (39%), Positives = 32/58 (55%)
 Frame = -2

Query: 616 LHRRLKHNVHSMMREVLKRHSLQMFSLHLCRCPRATAGPSPRGPLATVTKQYQTSLSF 443
           LH  LK++   +  EVL R+  ++ SLH  R P  T  P PR PL   T+Q+  SL +
Sbjct: 430 LHEHLKYDQLVIPPEVL-RYDEKLQSLHEGRTPPPTKTPPPRPPLP--TQQFGVSLQY 484


>UniRef50_A2PNS2 Cluster: Putative uncharacterized protein; n=1;
           Vibrio cholerae MZO-3|Rep: Putative uncharacterized
           protein - Vibrio cholerae MZO-3
          Length = 339

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 474 LLNNIKRPYRLLRSTFYNTFLSLFFFNYISQTP 376
           +LNN K PY   R TFY     +F +NY+   P
Sbjct: 211 VLNNNKHPYLETRITFYRNKSDMFTWNYVVDNP 243


>UniRef50_Q22AP8 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 163

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 36  CHFENYKVIDEFKRT*LVL-YIQIKIRLPCTRPA*THTQ 149
           C F NY +I EF  T   + Y +I +R+PC+  + T++Q
Sbjct: 123 CQFLNYDIIFEFYSTLSQIGYFEIHLRIPCSNQSQTYSQ 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,317,258
Number of Sequences: 1657284
Number of extensions: 12190280
Number of successful extensions: 33529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33512
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)