Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0438
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184...    30   2.2  
08_02_1362 + 26406710-26408530                                         28   6.6  

>08_01_1069 +
           10916376-10916448,10917331-10918031,10918222-10918443,
           10918526-10919351,10919437-10919574,10920431-10920569,
           10920655-10920781,10921895-10921936,10922089-10922160,
           10922491-10922589,10922694-10922735,10922947-10923027,
           10923129-10923179,10923265-10923346,10923741-10923835,
           10924739-10924810,10924907-10925023,10925176-10925244,
           10925507-10925573,10925709-10925950
          Length = 1118

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 178 HGSNDTVLQACVCVQAGRVHGNLIFICMYNTSYVRLN 68
           H   D VL+ C+ + A +    +IF  M+NT+++R N
Sbjct: 271 HIQGDVVLE-CISLDADQQREEMIFRVMFNTAFIRSN 306


>08_02_1362 + 26406710-26408530
          Length = 606

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 683 GGARGSTDRGACATGQRELLTEPTPSS*TQRALYDARGVKTTFATN 546
           GG   ST  G C    RE+LT    +   +  LYD  G+K  F  N
Sbjct: 400 GGGASSTPSGRC---MREILTHLLRNLDEKSRLYDDAGLKNIFLMN 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,563,075
Number of Sequences: 37544
Number of extensions: 344062
Number of successful extensions: 1041
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)