Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0438
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29744| Best HMM Match : Kinesin (HMM E-Value=6.3e-30)               29   3.9  
SB_26120| Best HMM Match : rve (HMM E-Value=8.9e-19)                   29   5.1  
SB_45970| Best HMM Match : rve (HMM E-Value=1.7e-11)                   29   5.1  

>SB_29744| Best HMM Match : Kinesin (HMM E-Value=6.3e-30)
          Length = 291

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 80  ITRIVHTNKDKIAVYATRLNAHAGLQHCI 166
           I+ ++HT + ++A+  T++N H+   H I
Sbjct: 139 ISTLLHTGRKRLAIAETKMNRHSSRSHAI 167


>SB_26120| Best HMM Match : rve (HMM E-Value=8.9e-19)
          Length = 436

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 527 PMSTGDGRPESPRPPRH 477
           PMS  +G P S RPPRH
Sbjct: 152 PMSFSEGLPTSERPPRH 168


>SB_45970| Best HMM Match : rve (HMM E-Value=1.7e-11)
          Length = 717

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 527 PMSTGDGRPESPRPPRH 477
           PMS  +G P S RPPRH
Sbjct: 20  PMSFSEGLPTSERPPRH 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,764,340
Number of Sequences: 59808
Number of extensions: 422097
Number of successful extensions: 1004
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)