Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0438
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U41552-7|AAU05560.1| 1174|Caenorhabditis elegans Hypothetical protein
            K07E3.7a protein.
          Length = 1174

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 471  LNNIKRPYRLLRSTFYNTFLSLFFFNYISQT 379
            L+ I  P RL  S FY +     FFN I+QT
Sbjct: 963  LSGIPPPRRLATSAFYFSVFGQMFFNIITQT 993


>U41552-6|AAU05561.1| 1203|Caenorhabditis elegans Hypothetical protein
            K07E3.7b protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 471  LNNIKRPYRLLRSTFYNTFLSLFFFNYISQT 379
            L+ I  P RL  S FY +     FFN I+QT
Sbjct: 992  LSGIPPPRRLATSAFYFSVFGQMFFNIITQT 1022


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 516 RGHRQRCKLNICSECRFNT 572
           R HR   K+NICS C +++
Sbjct: 814 RNHRDTAKINICSNCSYSS 832


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 516 RGHRQRCKLNICSECRFNT 572
           R HR   K+NICS C +++
Sbjct: 814 RNHRDTAKINICSNCSYSS 832


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,042,087
Number of Sequences: 27780
Number of extensions: 301714
Number of successful extensions: 766
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)