Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0438
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21210.1 68416.m02680 universal stress protein (USP) family p...    33   0.26 
At5g26740.2 68418.m03164 expressed protein contains Pfam profile...    28   5.5  
At5g26740.1 68418.m03163 expressed protein contains Pfam profile...    28   5.5  
At3g05940.1 68416.m00676 expressed protein contains Pfam profile...    28   5.5  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    28   7.3  

>At3g21210.1 68416.m02680 universal stress protein (USP) family
           protein / DC1 domain-containing protein contains Pfam
           profiles PF03107: DC1 domain, PF00582: universal stress
           protein family
          Length = 686

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 501 GPAVARGHRQRCKLNICSECRFNTSRIIECTLCLRRRC 614
           G    +GHR   +  ICS+    T+    CTLCLR  C
Sbjct: 256 GKGFIKGHRPNKQCEICSKSLLGTT-FYSCTLCLRPSC 292


>At5g26740.2 68418.m03164 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 422

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 116 QSYLYLYVQYELCSFEFVYNFVVFKMTCVTYLNP 15
           Q+YLYL + Y +     +Y  V+F M C   L P
Sbjct: 169 QAYLYLTIIYTISYTVALYALVLFYMACRDLLQP 202


>At5g26740.1 68418.m03163 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 422

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 116 QSYLYLYVQYELCSFEFVYNFVVFKMTCVTYLNP 15
           Q+YLYL + Y +     +Y  V+F M C   L P
Sbjct: 169 QAYLYLTIIYTISYTVALYALVLFYMACRDLLQP 202


>At3g05940.1 68416.m00676 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 422

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 116 QSYLYLYVQYELCSFEFVYNFVVFKMTCVTYLNP 15
           QSYLYL + Y +     +Y  V+F + C   L P
Sbjct: 169 QSYLYLTIIYTISYTVALYALVLFYVACKDLLQP 202


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 616 GSVRSSRCPVAQAPRSVEPRAPP 684
           G  R SR PV    RSV PR+PP
Sbjct: 638 GRRRISRSPVPARRRSVRPRSPP 660


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,679,414
Number of Sequences: 28952
Number of extensions: 261703
Number of successful extensions: 556
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)