Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0437
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    70   1e-12
At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2) iden...    46   3e-05
At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / AC...    44   1e-04
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar...    36   0.037
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar...    36   0.037
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    29   3.2  
At3g13620.1 68416.m01714 amino acid permease family protein weak...    29   4.2  
At3g18900.1 68416.m02400 expressed protein contains Pfam profile...    28   7.4  

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 35/84 (41%), Positives = 51/84 (60%)
 Frame = +3

Query: 51  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 230
           M L+E+F++ A  V  L  LP++  LL LY  +KQA  G  D  +RPG+  +K +AK+DA
Sbjct: 1   MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59

Query: 231 WHKLAGTSKEDAQKAYIEIVEGLI 302
           W  + G S E+A   YI  V+ L+
Sbjct: 60  WKAVEGKSSEEAMNDYITKVKQLL 83


>At4g27780.1 68417.m03990 acyl-CoA binding protein 2 (ACBP2)
           identical to acyl-CoA binding protein 2 [Arabidopsis
           thaliana] gi|12039034|gb|AAG46057
          Length = 354

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 29/77 (37%), Positives = 40/77 (51%)
 Frame = +3

Query: 69  FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 248
           F   AA  +  + +P+D Q   LY  +K AT G    A +P  L +  +AK+ AW KL  
Sbjct: 114 FVTTAAADRLSQKVPSDVQQ-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 171

Query: 249 TSKEDAQKAYIEIVEGL 299
              E+A + YIEIV  L
Sbjct: 172 MPPEEAMEKYIEIVTQL 188


>At5g53470.1 68418.m06645 acyl-CoA binding protein, putative / ACBP,
           putative similar to acyl-CoA binding protein 2
           [Arabidopsis thaliana] gi|12039034|gb|AAG46057
          Length = 338

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 27/77 (35%), Positives = 41/77 (53%)
 Frame = +3

Query: 69  FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 248
           F  AAA+ +  + +  + QL  LY  +K AT G    A +P  L +  +AK+ AW KL  
Sbjct: 104 FVAAAASDRLSQKVSNELQL-QLYGLYKIATEGPCT-APQPSALKMTARAKWQAWQKLGA 161

Query: 249 TSKEDAQKAYIEIVEGL 299
              E+A + YI++V  L
Sbjct: 162 MPPEEAMEKYIDLVTQL 178


>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 669

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +3

Query: 72  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 251
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L   
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84

Query: 252 SKEDAQKAYIEIVE 293
              +A + +++I+E
Sbjct: 85  PSIEAMRLFVKILE 98


>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 668

 Score = 35.5 bits (78), Expect = 0.037
 Identities = 23/74 (31%), Positives = 39/74 (52%)
 Frame = +3

Query: 72  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 251
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L   
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84

Query: 252 SKEDAQKAYIEIVE 293
              +A + +++I+E
Sbjct: 85  PSIEAMRLFVKILE 98


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 656 LNQNKYKTERPSTCILLKHDFEKDASYFIAV 564
           +N N YKTE  S C+ L   F     +FI +
Sbjct: 409 INDNHYKTEIASRCVELAEQFAPSNQWFIQI 439


>At3g13620.1 68416.m01714 amino acid permease family protein weak
           similarity to SP|Q9WTR6 Cystine/glutamate transporter
           (Amino acid transport system xc-) {Mus musculus};
           contains Pfam profile PF00324: Amino acid permease
          Length = 478

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 142 AYKLRSWASVGRAFRFFTLAAAWSNFSWRDILI 44
           AY+L   A +G   +FF + + W N  W  ILI
Sbjct: 314 AYQLEGMAELGFLPKFFGVRSKWFNTPWVGILI 346


>At3g18900.1 68416.m02400 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547; contains
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 815

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 635 TERPSTCILLKHDFEKDASYFIAVQYYALAPWKYRS 528
           TE P T  LLK DF  + S  + + Y++L   ++ +
Sbjct: 649 TETPRTISLLKFDFSIEKSVLVPLPYHSLQSRRFEA 684


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,822,404
Number of Sequences: 28952
Number of extensions: 287518
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)