Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0436
         (757 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    36   1.4  
UniRef50_Q5K8H2 Cluster: Putative uncharacterized protein; n=2; ...    35   2.5  
UniRef50_Q23R02 Cluster: Cation channel family protein; n=1; Tet...    33   5.8  
UniRef50_A0C0U2 Cluster: Chromosome undetermined scaffold_140, w...    33   5.8  
UniRef50_A5E680 Cluster: Putative uncharacterized protein; n=1; ...    33   7.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -2

Query: 300 FFIA*MVDELTAHLVLSGYW 241
           F +   VDELTAHLVLSGYW
Sbjct: 154 FLLLRWVDELTAHLVLSGYW 173


>UniRef50_Q5K8H2 Cluster: Putative uncharacterized protein; n=2;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 897

 Score = 34.7 bits (76), Expect = 2.5
 Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = +2

Query: 581 CLLPVVFSVASGLKSQRF*RSF--HFKKLSCKQLSLSIKEISAICDVYMRHTLIAI 742
           CLL  ++++AS + + +  R+   HF  ++C+QL L+I ++  + D     +++A+
Sbjct: 402 CLLYSMYTMASRISTSQPIRNLEPHFHSIACRQLELAIAQVDKLLDAIRASSILAV 457


>UniRef50_Q23R02 Cluster: Cation channel family protein; n=1;
            Tetrahymena thermophila SB210|Rep: Cation channel family
            protein - Tetrahymena thermophila SB210
          Length = 2522

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 26/92 (28%), Positives = 41/92 (44%)
 Frame = +1

Query: 439  FNFTYNPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVSFILHIFVFVSLTCRFFRCIRF 618
            FN  Y+ KL F     I  + L N      LN     ++FIL I + V     F++C   
Sbjct: 1237 FNQNYDLKLYFPLLLNIKLIGLNNKN----LNMYLHEINFILFILLEVYCPICFYQCFYN 1292

Query: 619  EITTILKKFSLQKAQLQTAVIINKRNIGYLRC 714
            +   I+K++S+   QL+  + I   N    +C
Sbjct: 1293 KQYIIVKQYSIFVLQLKKQIAITSSNKETNKC 1324


>UniRef50_A0C0U2 Cluster: Chromosome undetermined scaffold_140,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_140,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 492

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 478 RAFIHTLVLKNLTDGAVLNSMYISVSFILH-IFVFVSLTCRFFRCIRFEITTILKKFSLQ 654
           + F+  L+ K  T     +S  IS   ILH  +V  +  C+F  C  F+ITTI K F L 
Sbjct: 345 KLFLKNLISKIETHN--FSSQLISFKKILHKAYVLTNKKCQFLICQDFQITTIPKIFDLF 402

Query: 655 KAQL 666
            A L
Sbjct: 403 LALL 406


>UniRef50_A5E680 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 1077

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +1

Query: 556 FILHIFVFVSLTCRFFR---CIRFEITTILKKFSLQKA-QLQTAVIINKRNIGYLRCLYA 723
           F++  ++ +SL  R+F    C   EI  + +   L+K  +  +AVI+NK+ +  LR LY 
Sbjct: 317 FVVQDYIIISLLLRYFNGAVCDDNEIFGVGEDDDLEKPNEKHSAVIVNKKQLEVLRILYT 376

Query: 724 AHAHRNFIK 750
               RNF++
Sbjct: 377 ----RNFLQ 381


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 684,371,678
Number of Sequences: 1657284
Number of extensions: 13058096
Number of successful extensions: 25503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25495
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)