Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0436
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    26   0.28 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   6.1  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 499 VLKNLTDGAVLNSMYISVSFIL-HIFVFVSLTCRFFRCIRFEITTILKK 642
           VL  LT    L+  + S  +   HIF F ++ C F   I   I  + +K
Sbjct: 50  VLTILTSSVTLHVCFNSYMYAFTHIFFFFAICCDFIALIVVNIVHVFRK 98


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 361 ILNVLSICKILSLVNNCKVAPS 426
           I++  ++  ILS+VN C   PS
Sbjct: 319 IMSAAAVEHILSIVNTCSQIPS 340


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
          protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 9  AAGAIVYRSYPLRL 50
          AA A  YRS+PL L
Sbjct: 30 AAAAAAYRSFPLSL 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,734
Number of Sequences: 336
Number of extensions: 3887
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)