Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0436
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    31   0.23 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    30   0.41 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   3.8  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   8.8  

>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = -3

Query: 389 ILHILKTFRIIVF*FWKVSLLPRVNCTHVFFLLLRWWTSSQPTW 258
           +++++      V+  W ++  P +    + + L RWW  + PTW
Sbjct: 13  VMYLVSMLGFGVYIVWALTPAPVLKFFEIHYYLSRWWALAIPTW 56


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 295 YCLDGGRAHSPPGVKWLLEPIDIY 224
           Y  DGG  H P  V WLL P DIY
Sbjct: 231 YGTDGGPLHDPNTVMWLLRP-DIY 253


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 611  MQRKKRQVRDTNTKMCRMNET 549
            M+ + RQV D NT++ R+N T
Sbjct: 1004 MEEEMRQVNDANTELLRVNAT 1024


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 495 RVYESSCSEF*FRIIREIKLSFHRGRY 415
           +VY+S CSE   R+I  +KL +  G++
Sbjct: 360 KVYDSICSENNLRLIDRLKLYYGCGQW 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,066
Number of Sequences: 5004
Number of extensions: 59677
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)