Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0436
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)                   28   9.4  

>SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 445 FTYNPK-LKFTTRAFIHTLVLKNLTDGAVLNSMYISVS 555
           + Y  K LKF   A   T  LK L D ++L S YIS S
Sbjct: 59  YVYRLKALKFAVEARYCTAALKTLYDESILMSQYISPS 96


>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
          Length = 614

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 445 FTYNPK-LKFTTRAFIHTLVLKNLTDGAVLNSMYISVS 555
           + Y  K LKF   A   T  LK L D ++L S YIS S
Sbjct: 499 YVYRLKALKFAVEARYCTAALKTLYDESILMSQYISPS 536


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,659,512
Number of Sequences: 59808
Number of extensions: 428101
Number of successful extensions: 808
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)