Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0436
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf (d...    29   2.7  
Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF039042-1|AAP40514.1|  368|Caenorhabditis elegans Serpentine re...    28   8.2  

>AC084158-29|AAL27264.2|  666|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 3 protein.
          Length = 666

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 331 FYHV*IAHMFFFYCLDGGRAHSPPGVKWLLEPIDIYDVNEP 209
           FY + IA++ + YCL      SP   KWL EPI  +D + P
Sbjct: 605 FYIIFIAYLTY-YCLVAMEFISPIQTKWLAEPI-YHDFDAP 643


>Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical
           protein T19B10.6 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 474 YKSFHTHVSIKKSHRWRC 527
           Y SFH  V + K H WRC
Sbjct: 130 YHSFHDEVRLYKQHWWRC 147


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 454 NPKLKFTTRAFIHTLV-LKNLTDGAVLNSMYISVSFILHIFVFVSLTCRFFRCIRFEITT 630
           NP+  F    +   L  +K ++     NSM + +  +L +FVF+ L C  F  ++  I +
Sbjct: 76  NPRELFRKNDYFKKLFKIKCISKSTESNSMKMKIRTVLLVFVFIKL-CILFTVLQETIES 134

Query: 631 IL 636
           I+
Sbjct: 135 IM 136


>AF039042-1|AAP40514.1|  368|Caenorhabditis elegans Serpentine
           receptor, class w protein103 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +1

Query: 454 NPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVS-FILHIFVFV-SLTCRFFRCIRFEIT 627
           N  +       ++  + + +    +LN  + S   F+L  ++ V ++  +F  C+ F I 
Sbjct: 175 NRSIPLPVNCALYQKISRRVQFSVMLNDFFNSDDQFVLRSYLTVDAVVTKFIPCVAFSIL 234

Query: 628 TILKKFSLQK 657
           T+L   +LQK
Sbjct: 235 TVLLLHALQK 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,005
Number of Sequences: 27780
Number of extensions: 334445
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)