Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0436
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    29   2.5  
At2g11000.1 68415.m01176 natC N(alpha)-terminal acetyltransferas...    28   7.7  

>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 271 HSPPGVKWLLEPIDIYDVNEPSTLRYKF*GLKYSYN 164
           H P G++WL   IDI    E S   Y+  G    YN
Sbjct: 783 HVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYN 818


>At2g11000.1 68415.m01176 natC N(alpha)-terminal acetyltransferase,
           Mak10 subunit family protein contains Pfam PF04112:
           Mak10 subunit, NatC N(alpha)-terminal acetyltransferase;
           similar to corneal wound healing related protein
           (GI:8926320) [Rattus norvegicus]; weak similarity to
           Glucose repressible protein MAK10 (Swiss-Prot:Q02197)
           [Saccharomyces cerevisiae]
          Length = 695

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = -3

Query: 638 FRIVVISNRMQRKKRQVRDTNTKMCRMNETEIYILF 531
           FR++++ N  +RK ++ ++ +  M R +   +++LF
Sbjct: 516 FRVLIVVNTEERKAKRNKEYSRDMAREDRISLWVLF 551


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,325
Number of Sequences: 28952
Number of extensions: 294478
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)