Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0435
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 192 4e-50
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 188 5e-49
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 33 0.029
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 31 0.20
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.20
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.36
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 29 0.82
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 28 1.1
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 28 1.1
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 28 1.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 1.9
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 27 2.5
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 2.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.3
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 3.3
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 3.3
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 4.4
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 26 4.4
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 4.4
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 5.8
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.8
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 5.8
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 5.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 22 7.4
SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 7.7
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 7.7
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 192 bits (468), Expect = 4e-50
Identities = 106/227 (46%), Positives = 148/227 (65%), Gaps = 7/227 (3%)
Frame = +3
Query: 21 EKRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID-KNL 194
E R +K G DE+RRRR +E+RK KREE L KRRN+ EE I +
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIPLEQD 69
Query: 195 ATTDLD-EL----VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 359
DL+ EL ++ A +++ EAQ+ A + RK LS + NPPI ++I AG++P V+
Sbjct: 70 KENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEF 129
Query: 360 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALG 539
LS +N L+FE +WALTN+ASG+S QT+ VV A AVPVF+ LL S ++V +QAVWALG
Sbjct: 130 LSHENN-LLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALG 188
Query: 540 NIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLRNVTWVIVNLCR 680
NI GD P+ RD V++ GV++PLL++I+S+ + LRN TW + N+CR
Sbjct: 189 NIAGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCR 235
Score = 62.1 bits (144), Expect = 7e-11
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Frame = +3
Query: 288 LSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAW--ALTNIASGTSAQTNKVVHA 461
LS N I +I AGI LV+ L +P+ Q +T ++ NI +G QT +++
Sbjct: 275 LSDGANEKIQAIIDAGIPRRLVELLM---HPSAQVQTPALRSVGNIVTGDDVQTQVIINC 331
Query: 462 GAVPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPF 641
GA+ L LL SP + V +A W + NI +VIE ++ PL+ L+ +
Sbjct: 332 GALSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLL-TTADFKI 390
Query: 642 LRNVTWVIVN 671
+ W I N
Sbjct: 391 QKEACWAISN 400
Score = 55.2 bits (127), Expect = 8e-09
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Frame = +3
Query: 300 KNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 479
KNP D + ++P+L + + D L + WA++ ++ G + + ++ AG
Sbjct: 237 KNPQPDWNSISQVIPVLSKLIYTLDEDVL-VDALWAISYLSDGANEKIQAIIDAGIPRRL 295
Query: 480 LQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLR-NVT 656
++LLM P V A+ ++GNI+ V +I G + LLSL+ S P +R
Sbjct: 296 VELLMHPSAQVQTPALRSVGNIVTGDDVQTQVIINCGALSALLSLLSS--PRDGVRKEAC 353
Query: 657 WVIVNL 674
W I N+
Sbjct: 354 WTISNI 359
Score = 41.9 bits (94), Expect = 8e-05
Identities = 25/116 (21%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = +3
Query: 315 DELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLM 494
D ++ G+L L+ + ++ + W L+N+ G + Q + + +PV +L+
Sbjct: 199 DHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIY 258
Query: 495 SPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLI---KSDIPIPFLRNV 653
+ E+V A+WA+ + +I+ G+ + L+ L+ + + P LR+V
Sbjct: 259 TLDEDVLVDALWAISYLSDGANEKIQAIIDAGIPRRLVELLMHPSAQVQTPALRSV 314
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 188 bits (459), Expect = 5e-49
Identities = 108/231 (46%), Positives = 150/231 (64%), Gaps = 10/231 (4%)
Frame = +3
Query: 18 SEKRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD---EEEID 185
S++R FK+ G DE+RR+R E +E+RK KREE+L KRRN+ D EEE D
Sbjct: 7 SDRRSR-FKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEAD 65
Query: 186 KNLATTDL---DELVMNAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPIL 350
++ + DE A+ +++ E QL AV + RK LS + +PPID++IA G++
Sbjct: 66 QSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRF 125
Query: 351 VQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVW 530
VQ L +++ LQFE AWALTNIASGT+ QT VV +GAVP F+QLL SP ++V +Q VW
Sbjct: 126 VQFLE-SEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVW 184
Query: 531 ALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDI-PIPFLRNVTWVIVNLCR 680
ALGNI GD RD+V+ GV++PLL++++S + LRN TW + NLCR
Sbjct: 185 ALGNIAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCR 235
Score = 58.0 bits (134), Expect = 1e-09
Identities = 38/128 (29%), Positives = 59/128 (46%)
Frame = +3
Query: 288 LSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGA 467
LS N I ++ G P LV+ LS + + +Q ++ NI +GT AQT ++ GA
Sbjct: 275 LSDGPNEKIGAILDVGCAPRLVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGA 333
Query: 468 VPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLLSLIKSDIPIPFLR 647
+ F LL EN+ +A W + NI +IE ++ PL+ L+ S +
Sbjct: 334 LNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLL-SYADYKTKK 392
Query: 648 NVTWVIVN 671
W I N
Sbjct: 393 EACWAISN 400
Score = 46.4 bits (105), Expect = 4e-06
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Frame = +3
Query: 315 DELIAAGILPILVQCL-SRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 491
D ++ G+L L+ L S A + ++ W L+N+ G + N + AVP+ +LL
Sbjct: 198 DYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLL 257
Query: 492 MSPHENVCDQAVWALGNIIGDGPVLR-DFVIELGVVKPLLSLIKS---DIPIPFLRNV 653
S + A WA+ + + DGP + ++++G L+ L+ S +I P LR+V
Sbjct: 258 YSEDVEIIVDACWAI-SYLSDGPNEKIGAILDVGCAPRLVELLSSPSVNIQTPALRSV 314
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 33.5 bits (73), Expect = 0.029
Identities = 26/108 (24%), Positives = 44/108 (40%)
Frame = +3
Query: 180 IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 359
+DK L ++ + +N ++ V Q +LS D + + + A GILP+L +
Sbjct: 512 LDKRTHLASLLSSLLGSLRDKNIGSKDTTVSQIASILSEDLSLKREIIQAHGILPLL-ET 570
Query: 360 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLLMSPH 503
L P +Q + +A KV AG +P+ L H
Sbjct: 571 LREIKTPDVQLLLLKLINTVAFDDHTTLQKVCFAGGLPLMLSFSNREH 618
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 30.7 bits (66), Expect = 0.20
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 528 ILPDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLK 406
I P+H+ + + R G+ + HR + FV +F K+ L K
Sbjct: 495 INPEHLNYFKFIGRVIGLAIFHRRFVDAFFVVSFYKMILQK 535
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = -3
Query: 340 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 167
SIP + SS ++ SS + ++++ S FS++++ ++SS+ S + LSISSSS
Sbjct: 544 SIPTSSSSDFSSSITTISSGI---SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
Score = 27.5 bits (58), Expect = 1.9
Identities = 36/162 (22%), Positives = 71/162 (43%)
Frame = -3
Query: 655 VTFLRNGIGMSDLIKLSSGLTTPSSITKSRRTGPSPIMLPRAHTA*SHTFS*GDIKS*RN 476
+T + +GI S + S ++ SSI S + PS L + ++ S TFS S +
Sbjct: 557 ITTISSGISSSSI---PSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSS 613
Query: 475 TGTAPAWTTLFVCADVPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLS 296
++ + ++ + + P + + S + S L + + +IP +SSS+ + S
Sbjct: 614 ISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILS---SSISTIP--ISSSLSTYSS 668
Query: 295 HESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSS 170
S T + +S ++ + SSS S + S+ S+
Sbjct: 669 --SVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVST 708
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.36
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 66 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL-VMNAANAE 242
E++ R ++ E K ++ + Q+RR + S E DKN++ DLDE +++ A
Sbjct: 51 ELKIRVAQLERERAKLEQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDKPAAN 110
Query: 243 NPEAQLAA 266
N +A A
Sbjct: 111 NTKADAEA 118
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 28.7 bits (61), Expect = 0.82
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +3
Query: 21 EKRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 143
E R+ ++ K++DE RR++ E+ +E ++ E+ L+K R
Sbjct: 294 ESRLQKMQDNAKELDESRRKKIEL-LEKKERDEEQFLEKER 333
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 28.3 bits (60), Expect = 1.1
Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Frame = +3
Query: 240 ENPEAQLAAVQQCRKLLS-CDKNPPIDELIAA-GILPILVQCLSRADNPALQFETAWALT 413
E+P +++A++ L++ C+K+ I I++ G+ + + + E+ AL
Sbjct: 738 ESPGVKISALRLISSLINKCEKDEDISSFISSKGVTSLWDKVYTGTPK-----ESEAALD 792
Query: 414 NIASGTSAQTNKVVHAGAVPVFLQLLMSPH-ENVCDQAVWALGNIIGDGPVL 566
+A A ++ H+ +P+ +LL + + +NV D +V AL II D P L
Sbjct: 793 VLAWVDKALVSRK-HSEGIPLAFKLLDTLNLQNVGDSSVKALSIIIKDDPAL 843
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Frame = +3
Query: 9 D*SSEKRMHVFKNAGKDVDE---MRRR---RNEVTVELRKNKREETLQKRRNVPISYSTD 170
D ++ ++ +G V+E + R+ R + ++ ++N+ T+QK V S+
Sbjct: 272 DFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSS 331
Query: 171 EEEIDKNLATT 203
EEE K+L T
Sbjct: 332 EEEAVKSLPET 342
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -1
Query: 528 ILPDHIRFHEVTSRAEGIQVLHRHGLLCLF-VQTFRKLCLLKPKRSRIVTLDCQ 370
I P+H+ + R G+ + HR L F V ++KL K + + ++D +
Sbjct: 514 INPEHLNYFRFIGRVIGLAIFHRRFLDAFFVVSLYKKLLRKKVSLADMESIDAE 567
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 501 EVTSRAEG--IQVLHRHGLLCLFVQTFRKLCLLKPKRSRIVTLDCQPSKGTE 352
E+TS + +Q L+RHGL+ + + + + LK K + ++ + Q G E
Sbjct: 1657 EITSSNDQNIVQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKE 1708
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 27.1 bits (57), Expect = 2.5
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Frame = +3
Query: 171 EEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLS--CDKNPPIDE------LI 326
EEEI+ NL + +L A + A+ AA LL C+++ DE +
Sbjct: 288 EEEIEVNLEIQEAQDLNEVPARQNHGFARAAAADILPVLLKLLCNQDEDADEDDWNISMA 347
Query: 327 AAGILPILVQCLSRAD-NPALQF-------------ETA-WALTNIASGTSAQTNKVVHA 461
AA L + Q + NP L F E A A ++ G + +
Sbjct: 348 AATCLQLFAQVVGDLIVNPVLAFVEQNIQNPDWHQREAAVMAFGSVLEGPNVAMLTPLVN 407
Query: 462 GAVPVFLQLLMSPHENVCDQAVWALGNI 545
A+PV + +++ P V D WALG I
Sbjct: 408 QALPVLINMMVDPVIFVKDTTAWALGQI 435
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +3
Query: 9 D*SSEKRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQ--KRRNVPISYSTDEEEI 182
D S KR+ V K K VD ++ + T ++ + Q K+++ ++ S DE+
Sbjct: 16 DGSMNKRVKVAK-LPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFA 74
Query: 183 DKNLATTDLDELVMNAANAENPE 251
+ ++ DEL + AEN E
Sbjct: 75 GFGESASENDELESAESEAENDE 97
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.3
Identities = 36/148 (24%), Positives = 60/148 (40%)
Frame = -3
Query: 610 LSSGLTTPSSITKSRRTGPSPIMLPRAHTA*SHTFS*GDIKS*RNTGTAPAWTTLFVCAD 431
L S + SI+ S + P+ + S T S S ++ T + +
Sbjct: 149 LPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSS 208
Query: 430 VPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAANCA 251
+ V + + S ++ S L SIP+ SSS S SS + A+ +
Sbjct: 209 YLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS--SSSSTASSS 266
Query: 250 SGFSALAAFITSSSRSVVARFLSISSSS 167
S S++ + +SSS S + +ISSSS
Sbjct: 267 SSSSSIISSSSSSSSSPTSTSSTISSSS 294
Score = 26.2 bits (55), Expect = 4.4
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 1/169 (0%)
Frame = -3
Query: 667 TITHVTFLRNGIGMSDLIKLSSGLTTPSSITKS-RRTGPSPIMLPRAHTA*SHTFS*GDI 491
T T T + S SS +++ SS + S T S M + + S T S I
Sbjct: 284 TSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTI 343
Query: 490 KS*RNTGTAPAWTTLFVCADVPEAMFVKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSI 311
S + ++P+ ++ ++ + VS+ ++ S+ + S PA+ SS
Sbjct: 344 SS---SSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHS 400
Query: 310 GGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSSV 164
SH+SS ++A +S F + SSS S S+SS +
Sbjct: 401 SSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPI 449
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +3
Query: 66 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 215
E++R++++ E K KR++ L+ + + DE++ ++ D D+
Sbjct: 5 ELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQ 54
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 242 FCVGSVHHQLIKVGGSEVLVDLLLI 168
+C G H ++ +GGS V +DL+ I
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQI 287
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 591 VVKPLLSLIKSDIPIPFLRNVTWVIVNLCR 680
V++P SL++ D P+P VT I++ CR
Sbjct: 231 VIRPYTSLVEEDDPVPV---VTDTIISRCR 257
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = -1
Query: 522 PDHIRFHEVTSRAEGIQVLHRHGLLCLFVQTFRKLCLLKP 403
PD + R G+ + HR L FV F K L KP
Sbjct: 401 PDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKP 440
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 4.4
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Frame = +3
Query: 75 RRRNEVTVELRKNKREETLQKRRNVPISYSTDEE-------EIDKNLATTDLDELVMNAA 233
R+R++ ++KN R+++ Q++RN+ ++EE EID + + +
Sbjct: 113 RKRSDKLKTMKKN-RKQSFQRKRNILEDGKSEEEKFPMKCDEIDPYSRQAIVIRYISDEV 171
Query: 234 NAENPEA-QLAAVQQCRKLLSCDK--NPPIDELIAAGIL 341
EN Q+ + Q KL+ K P +D + GI+
Sbjct: 172 AKENIGGNQVYLIHQLLKLVRAPKFEAPEVDNYVVMGIV 210
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 622 DLIKLSSGLTTPSSITKSRRTGPSPI--MLPRAH 527
D I L L+TP + ++R PSPI LP H
Sbjct: 28 DSIVLEQELSTPKQVNQARPKFPSPITPTLPEMH 61
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/42 (28%), Positives = 26/42 (61%)
Frame = +3
Query: 24 KRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 149
K HV + K +E R+R+ E+ E+R+++ +E +K++ +
Sbjct: 349 KISHVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKL 390
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 30 MHVFKNAGKDVDEMRR--RRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 179
M V +G DVD ++E T+E K K E Q+R+ + T ++E
Sbjct: 451 MEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDDE 502
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 525 VWALGNIIGDGPVLRDFVIELGVVKPL 605
V+A+G+I GD P D + GVV P+
Sbjct: 59 VYAIGDIHGDFPNALDVLSAAGVVSPV 85
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 18 SEKRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 143
S +R K D + R+ + + +R+ +REE L+KRR
Sbjct: 172 SIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRR 213
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 21.8 bits (44), Expect(2) = 7.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 120 EETLQKRRNVPISYSTDEEEIDKNLATTDLD 212
E+T+ + + I YST + ++ A DL+
Sbjct: 94 EKTINNNQELRIKYSTSPQRFIESEADLDLE 124
Score = 21.8 bits (44), Expect(2) = 7.4
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +3
Query: 234 NAENPEAQLAAVQQCRKLLSCDKNPP-----IDELIAAGILPILVQCLSRAD 374
N EN + + ++ +L D +P LI +G+LP+L + R D
Sbjct: 155 NHENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIKRFD 206
>SPAC56F8.13 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 101
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 673 RLTITHVTFLRNGIGMSDLIKLSSGLTTPS 584
+L + H TFL N + + LIK ++ LT PS
Sbjct: 25 KLILPHNTFLTNILFLLGLIKHTNQLTFPS 54
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 93 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 194
T+E KN +T + ++ +SY D + +DK +
Sbjct: 137 TLETEKNLNSKTSESLKSPTLSYPFDLDSLDKRI 170
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 159 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 323
+S+DEEE+D T+ +E N A E + +Q + + +K P DE+
Sbjct: 146 FSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEI-LEKPVPKDEV 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,610
Number of Sequences: 5004
Number of extensions: 61200
Number of successful extensions: 295
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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